RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 CREBRFQ8IUR6 639 aa10.68□□□□□ -0.7
LIG3-202ENST00000378526 RABEP1Q15276 862 aa10.68□□□□□ -0.7
LIG3-202ENST00000378526 GOLGA6L10A0A0M3HER8 536 aa10.67□□□□□ -0.7
LIG3-202ENST00000378526 RNF20Q5VTR2 975 aa10.67□□□□□ -0.7
LIG3-202ENST00000378526 TMCO5BA8MYB1 307 aa10.67□□□□□ -0.7
LIG3-202ENST00000378526 ERLIN2O94905 339 aa10.67□□□□□ -0.7
LIG3-202ENST00000378526 CFAP57Q96MR6 1250 aa10.66□□□□□ -0.7
LIG3-202ENST00000378526 NAT10Q9H0A0 1025 aaKnown RBP10.66□□□□□ -0.7
LIG3-202ENST00000378526 NASPP49321 788 aaPredicted RBP10.66□□□□□ -0.7
LIG3-202ENST00000378526 EZRP15311 586 aaKnown RBP10.65□□□□□ -0.7
LIG3-202ENST00000378526 SEPT11Q9NVA2 429 aaKnown RBP10.65□□□□□ -0.7
LIG3-202ENST00000378526 BCCIPQ9P287 314 aaKnown RBP eCLIP10.65□□□□□ -0.7
LIG3-202ENST00000378526 FYB1O15117 783 aa10.65□□□□□ -0.7
LIG3-202ENST00000378526 LETM1O95202 739 aaPredicted RBP10.65□□□□□ -0.71
LIG3-202ENST00000378526 ISY1Q9ULR0 285 aaKnown RBP10.65□□□□□ -0.71
LIG3-202ENST00000378526 POLR3GO15318 223 aaPredicted RBP10.64□□□□□ -0.71
LIG3-202ENST00000378526 ERLIN1O75477 346 aa10.64□□□□□ -0.71
LIG3-202ENST00000378526 AEBP1Q8IUX7 1158 aa10.64□□□□□ -0.71
LIG3-202ENST00000378526 GPATCH11Q8N954 259 aa10.64□□□□□ -0.71
LIG3-202ENST00000378526 H3BQV1 296 aa10.64□□□□□ -0.71
LIG3-202ENST00000378526 IFFO2Q5TF58 517 aa10.64□□□□□ -0.71
LIG3-202ENST00000378526 CCDC9Q9Y3X0 531 aaKnown RBP10.64□□□□□ -0.71
LIG3-202ENST00000378526 CHMP4AQ9BY43 222 aa10.63□□□□□ -0.71
LIG3-202ENST00000378526 NF2P35240 595 aa10.63□□□□□ -0.71
LIG3-202ENST00000378526 SWAP70Q9UH65 585 aa10.63□□□□□ -0.71
LIG3-202ENST00000378526 HDAC5Q9UQL6 1122 aa10.62□□□□□ -0.71
LIG3-202ENST00000378526 MFAP1P55081 439 aaKnown RBP10.62□□□□□ -0.71
LIG3-202ENST00000378526 CTR9Q6PD62 1173 aa10.62□□□□□ -0.71
LIG3-202ENST00000378526 KIAA1328Q86T90 577 aa10.62□□□□□ -0.71
LIG3-202ENST00000378526 SLC26A8Q96RN1 970 aa10.62□□□□□ -0.71
LIG3-202ENST00000378526 PDCL3Q9H2J4 239 aa10.62□□□□□ -0.71
LIG3-202ENST00000378526 PDIA4P13667 645 aaKnown RBP10.62□□□□□ -0.71
LIG3-202ENST00000378526 CCDC47Q96A33 483 aaKnown RBP10.62□□□□□ -0.71
LIG3-202ENST00000378526 CHGAP10645 457 aaKnown RBP10.62□□□□□ -0.71
LIG3-202ENST00000378526 RBM28Q9NW13 759 aaKnown RBP10.62□□□□□ -0.71
LIG3-202ENST00000378526 STK31Q9BXU1 1019 aa10.61□□□□□ -0.71
LIG3-202ENST00000378526 TTLL5Q6EMB2 1281 aa10.61□□□□□ -0.71
LIG3-202ENST00000378526 IQCEQ6IPM2 695 aa10.61□□□□□ -0.71
LIG3-202ENST00000378526 CLGNO14967 610 aa10.61□□□□□ -0.71
LIG3-202ENST00000378526 GTF2A1P52655 376 aaPredicted RBP10.61□□□□□ -0.71
LIG3-202ENST00000378526 WDR66Q8TBY9 1149 aa10.61□□□□□ -0.71
LIG3-202ENST00000378526 SEPT6Q14141 434 aa10.61□□□□□ -0.71
LIG3-202ENST00000378526 SASS6Q6UVJ0 657 aa10.61□□□□□ -0.71
LIG3-202ENST00000378526 LUZP1Q86V48 1076 aa10.61□□□□□ -0.71
LIG3-202ENST00000378526 U2SURPO15042 1029 aaKnown RBP10.61□□□□□ -0.71
LIG3-202ENST00000378526 PPM1EQ8WY54 764 aa10.61□□□□□ -0.71
LIG3-202ENST00000378526 RCAN3Q9UKA8 241 aa10.6□□□□□ -0.71
LIG3-202ENST00000378526 FAM161AQ3B820 660 aa10.6□□□□□ -0.71
LIG3-202ENST00000378526 MICALCLQ6ZW33 695 aa10.6□□□□□ -0.71
LIG3-202ENST00000378526 CPSF2Q9P2I0 782 aaKnown RBP10.6□□□□□ -0.71
LIG3-202ENST00000378526 FAM114A1Q8IWE2 563 aa10.6□□□□□ -0.71
LIG3-202ENST00000378526 SEPT7Q16181 437 aaKnown RBP10.6□□□□□ -0.71
LIG3-202ENST00000378526 BBXQ8WY36 941 aaPredicted RBP10.59□□□□□ -0.71
LIG3-202ENST00000378526 ODF2Q5BJF6 829 aa10.59□□□□□ -0.71
LIG3-202ENST00000378526 CCDC146Q8IYE0 955 aa10.59□□□□□ -0.71
LIG3-202ENST00000378526 TXLNBQ8N3L3 684 aa10.59□□□□□ -0.71
LIG3-202ENST00000378526 PCMTD1Q96MG8 357 aaPredicted RBP10.59□□□□□ -0.71
LIG3-202ENST00000378526 NUCB2P80303 420 aa10.59□□□□□ -0.71
LIG3-202ENST00000378526 CENPHQ9H3R5 247 aa10.59□□□□□ -0.71
LIG3-202ENST00000378526 SHTN1A0MZ66 631 aa10.59□□□□□ -0.71
LIG3-202ENST00000378526 ENOX2Q16206 610 aaKnown RBP10.59□□□□□ -0.71
LIG3-202ENST00000378526 GBP2P32456 591 aaPredicted RBP10.59□□□□□ -0.71
LIG3-202ENST00000378526 CCAR1Q8IX12 1150 aaKnown RBP10.58□□□□□ -0.72
LIG3-202ENST00000378526 CHMP5Q9NZZ3 219 aa10.58□□□□□ -0.72
LIG3-202ENST00000378526 ZNF777Q9ULD5 760 aaPredicted RBP10.58□□□□□ -0.72
LIG3-202ENST00000378526 FEZ1Q99689 392 aa10.57□□□□□ -0.72
LIG3-202ENST00000378526 UQCRHLA0A096LP55 91 aa10.57□□□□□ -0.72
LIG3-202ENST00000378526 UQCRHP07919 91 aa10.57□□□□□ -0.72
LIG3-202ENST00000378526 TIGD1Q96MW7 591 aa10.57□□□□□ -0.72
LIG3-202ENST00000378526 CCDC175P0C221 793 aa10.57□□□□□ -0.72
LIG3-202ENST00000378526 NAP1L1P55209 391 aaKnown RBP10.57□□□□□ -0.72
LIG3-202ENST00000378526 FAM184AQ8NB25 1140 aa10.57□□□□□ -0.72
LIG3-202ENST00000378526 LRRCC1Q9C099 1032 aa10.57□□□□□ -0.72
LIG3-202ENST00000378526 KDM2AQ9Y2K7 1162 aa10.57□□□□□ -0.72
LIG3-202ENST00000378526 CENPQQ7L2Z9 268 aaPredicted RBP10.56□□□□□ -0.72
LIG3-202ENST00000378526 SUDS3Q9H7L9 328 aaPredicted RBP10.56□□□□□ -0.72
LIG3-202ENST00000378526 PHLDB1Q86UU1 1377 aa10.56□□□□□ -0.72
LIG3-202ENST00000378526 HSP90AB2PQ58FF8 381 aa10.56□□□□□ -0.72
LIG3-202ENST00000378526 SMARCE1Q969G3 411 aa10.56□□□□□ -0.72
LIG3-202ENST00000378526 CT47A1Q5JQC4 288 aaPredicted RBP10.56□□□□□ -0.72
LIG3-202ENST00000378526 RBM33Q96EV2 1170 aaKnown RBP10.56□□□□□ -0.72
LIG3-202ENST00000378526 NPHP1O15259 732 aa10.55□□□□□ -0.72
LIG3-202ENST00000378526 FBXO3Q9UK99 471 aa10.55□□□□□ -0.72
LIG3-202ENST00000378526 TDO2P48775 406 aa10.55□□□□□ -0.72
LIG3-202ENST00000378526 CEP63Q96MT8 703 aa10.55□□□□□ -0.72
LIG3-202ENST00000378526 TMX4Q9H1E5 349 aaPredicted RBP10.55□□□□□ -0.72
LIG3-202ENST00000378526 MCM3P25205 808 aa10.55□□□□□ -0.72
LIG3-202ENST00000378526 TICAM2Q86XR7 235 aa10.55□□□□□ -0.72
LIG3-202ENST00000378526 KIF7Q2M1P5 1343 aa10.55□□□□□ -0.72
LIG3-202ENST00000378526 DAAM2Q86T65 1068 aa10.55□□□□□ -0.72
LIG3-202ENST00000378526 TRIM6-TRIM34B2RNG4 842 aa10.54□□□□□ -0.72
LIG3-202ENST00000378526 RBM10P98175 930 aaKnown RBP10.54□□□□□ -0.72
LIG3-202ENST00000378526 CCDC112Q8NEF3 446 aa10.54□□□□□ -0.72
LIG3-202ENST00000378526 ERICH4A6NGS2 130 aa10.54□□□□□ -0.72
LIG3-202ENST00000378526 LUC7LQ9NQ29 371 aaKnown RBP10.54□□□□□ -0.72
LIG3-202ENST00000378526 CGNL1Q0VF96 1302 aa10.54□□□□□ -0.72
LIG3-202ENST00000378526 GBP3Q9H0R5 595 aa10.53□□□□□ -0.72
LIG3-202ENST00000378526 IPO4Q8TEX9 1081 aaKnown RBP10.53□□□□□ -0.72
LIG3-202ENST00000378526 KIF3BO15066 747 aa10.53□□□□□ -0.72
LIG3-202ENST00000378526 CCDC91Q7Z6B0 441 aa10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 7.9 ms