RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 KIAA1107Q9UPP5 1409 aa18.24■□□□□ 0.51
RTN3-204ENST00000354497 CPS1P31327 1500 aa18.23■□□□□ 0.51
RTN3-204ENST00000354497 SHANK2Q9UPX8 1470 aa18.21■□□□□ 0.51
RTN3-204ENST00000354497 POLR1AO95602 1720 aaPredicted RBP18.21■□□□□ 0.51
RTN3-204ENST00000354497 ADGBQ8N7X0 1667 aa18.21■□□□□ 0.51
RTN3-204ENST00000354497 TNRQ92752 1358 aa18.2■□□□□ 0.5
RTN3-204ENST00000354497 FBXO31Q5XUX0 539 aaPredicted RBP18.19■□□□□ 0.5
RTN3-204ENST00000354497 NEURL4Q96JN8 1562 aa18.19■□□□□ 0.5
RTN3-204ENST00000354497 MTUS2Q5JR59 1369 aa18.17■□□□□ 0.5
RTN3-204ENST00000354497 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP18.17■□□□□ 0.5
RTN3-204ENST00000354497 ZNF644Q9H582 1327 aaPredicted RBP18.17■□□□□ 0.5
RTN3-204ENST00000354497 ANKLE2Q86XL3 938 aa18.16■□□□□ 0.5
RTN3-204ENST00000354497 KIF3BO15066 747 aa18.15■□□□□ 0.5
RTN3-204ENST00000354497 DHX29Q7Z478 1369 aaKnown RBP18.14■□□□□ 0.49
RTN3-204ENST00000354497 VWDEQ8N2E2 1590 aa18.13■□□□□ 0.49
RTN3-204ENST00000354497 PPP4R3CPQ6ZMV5 832 aa18.13■□□□□ 0.49
RTN3-204ENST00000354497 KDM5DQ9BY66 1539 aa18.13■□□□□ 0.49
RTN3-204ENST00000354497 NPHP4O75161 1426 aaPredicted RBP18.12■□□□□ 0.49
RTN3-204ENST00000354497 WASHC2CQ9Y4E1 1318 aa18.12■□□□□ 0.49
RTN3-204ENST00000354497 PZPP20742 1482 aa18.12■□□□□ 0.49
RTN3-204ENST00000354497 THEMISQ8N1K5 641 aaPredicted RBP18.12■□□□□ 0.49
RTN3-204ENST00000354497 TIAM1Q13009 1591 aa18.1■□□□□ 0.49
RTN3-204ENST00000354497 FAM135AQ9P2D6 1515 aa18.1■□□□□ 0.49
RTN3-204ENST00000354497 UGGT1Q9NYU2 1555 aa18.09■□□□□ 0.49
RTN3-204ENST00000354497 RTEL1-TNFRSF6BF6WH68 1400 aa18.09■□□□□ 0.49
RTN3-204ENST00000354497 MBD5Q9P267 1494 aa18.09■□□□□ 0.49
RTN3-204ENST00000354497 ALKQ9UM73 1620 aa18.08■□□□□ 0.48
RTN3-204ENST00000354497 MIA2Q96PC5 1412 aa18.07■□□□□ 0.48
RTN3-204ENST00000354497 NLRP1Q9C000 1473 aa18.07■□□□□ 0.48
RTN3-204ENST00000354497 IQGAP1P46940 1657 aa18.05■□□□□ 0.48
RTN3-204ENST00000354497 MED14O60244 1454 aa18.04■□□□□ 0.48
RTN3-204ENST00000354497 CCDC141Q6ZP82 1450 aa18.04■□□□□ 0.48
RTN3-204ENST00000354497 EHBP1L1Q8N3D4 1523 aa18.04■□□□□ 0.48
RTN3-204ENST00000354497 DEPDC5O75140 1603 aa18.04■□□□□ 0.48
RTN3-204ENST00000354497 LRRC7Q96NW7 1537 aa18.04■□□□□ 0.48
RTN3-204ENST00000354497 RNF17Q9BXT8 1623 aaKnown RBP18.03■□□□□ 0.48
RTN3-204ENST00000354497 SYNMO15061 1565 aa18.01■□□□□ 0.47
RTN3-204ENST00000354497 CAMSAP2Q08AD1 1489 aa18.01■□□□□ 0.47
RTN3-204ENST00000354497 STRCP1A6NGW2 1772 aa18■□□□□ 0.47
RTN3-204ENST00000354497 MAPK8IP2Q13387 824 aaPredicted RBP17.99■□□□□ 0.47
RTN3-204ENST00000354497 CEP162Q5TB80 1403 aa17.99■□□□□ 0.47
RTN3-204ENST00000354497 TSPY4P0CV99 314 aa17.96■□□□□ 0.47
RTN3-204ENST00000354497 TSPY10P0CW01 314 aa17.96■□□□□ 0.47
RTN3-204ENST00000354497 RSPH4AQ5TD94 716 aa17.95■□□□□ 0.46
RTN3-204ENST00000354497 RGS17Q9UGC6 210 aaPredicted RBP17.95■□□□□ 0.46
RTN3-204ENST00000354497 NCOA2Q15596 1464 aa17.94■□□□□ 0.46
RTN3-204ENST00000354497 ABCC3O15438 1527 aa17.93■□□□□ 0.46
RTN3-204ENST00000354497 ERVK-7P63135 1459 aa17.93■□□□□ 0.46
RTN3-204ENST00000354497 SCAF11Q99590 1463 aaKnown RBP17.91■□□□□ 0.46
RTN3-204ENST00000354497 ZC3H13Q5T200 1668 aaKnown RBP17.91■□□□□ 0.46
RTN3-204ENST00000354497 TXNDC2Q86VQ3 553 aa17.89■□□□□ 0.46
RTN3-204ENST00000354497 ARHGEF5Q12774 1597 aa17.89■□□□□ 0.45
RTN3-204ENST00000354497 POTEAQ6S8J7 498 aa17.88■□□□□ 0.45
RTN3-204ENST00000354497 UBR1Q8IWV7 1749 aa17.88■□□□□ 0.45
RTN3-204ENST00000354497 LTKP29376 864 aa17.87■□□□□ 0.45
RTN3-204ENST00000354497 EID1Q9Y6B2 187 aa17.86■□□□□ 0.45
RTN3-204ENST00000354497 CEP152O94986 1710 aa17.86■□□□□ 0.45
RTN3-204ENST00000354497 EIF2AK4Q9P2K8 1649 aaKnown RBP17.83■□□□□ 0.45
RTN3-204ENST00000354497 STAG3Q9UJ98 1225 aa17.82■□□□□ 0.44
RTN3-204ENST00000354497 XIRP1Q702N8 1843 aaKnown RBP17.82■□□□□ 0.44
RTN3-204ENST00000354497 FAM135BQ49AJ0 1406 aa17.82■□□□□ 0.44
RTN3-204ENST00000354497 MROH1Q8NDA8 1641 aa17.82■□□□□ 0.44
RTN3-204ENST00000354497 CFAP65Q6ZU64 1925 aaKnown RBP17.81■□□□□ 0.44
RTN3-204ENST00000354497 TMEM94Q12767 1356 aa17.81■□□□□ 0.44
RTN3-204ENST00000354497 ARHGAP23Q9P227 1491 aa17.81■□□□□ 0.44
RTN3-204ENST00000354497 SLIT1O75093 1534 aa17.81■□□□□ 0.44
RTN3-204ENST00000354497 MAST1Q9Y2H9 1570 aa17.81■□□□□ 0.44
RTN3-204ENST00000354497 RBM33Q96EV2 1170 aaKnown RBP17.81■□□□□ 0.44
RTN3-204ENST00000354497 SETD1AO15047 1707 aaKnown RBP17.78■□□□□ 0.44
RTN3-204ENST00000354497 ROBO1Q9Y6N7 1651 aa17.78■□□□□ 0.44
RTN3-204ENST00000354497 PROSER2Q86WR7 435 aaPredicted RBP17.78■□□□□ 0.44
RTN3-204ENST00000354497 POTEDQ86YR6 584 aa17.78■□□□□ 0.44
RTN3-204ENST00000354497 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.78■□□□□ 0.44
RTN3-204ENST00000354497 PIK3C2BO00750 1634 aa17.76■□□□□ 0.43
RTN3-204ENST00000354497 DUOX2Q9NRD8 1548 aa17.76■□□□□ 0.43
RTN3-204ENST00000354497 TMEM2Q9UHN6 1383 aa17.75■□□□□ 0.43
RTN3-204ENST00000354497 BCANQ96GW7 911 aa17.75■□□□□ 0.43
RTN3-204ENST00000354497 SLC26A8Q96RN1 970 aa17.75■□□□□ 0.43
RTN3-204ENST00000354497 KCNA6P17658 529 aa17.74■□□□□ 0.43
RTN3-204ENST00000354497 LRRC9Q6ZRR7 1453 aa17.73■□□□□ 0.43
RTN3-204ENST00000354497 MAP3K1Q13233 1512 aa17.73■□□□□ 0.43
RTN3-204ENST00000354497 ARHGAP31Q2M1Z3 1444 aa17.72■□□□□ 0.43
RTN3-204ENST00000354497 RRP7BPQ9NSQ0 103 aa17.72■□□□□ 0.43
RTN3-204ENST00000354497 PRDM15P57071 1507 aaPredicted RBP17.71■□□□□ 0.43
RTN3-204ENST00000354497 EFCAB6Q5THR3 1501 aa17.71■□□□□ 0.43
RTN3-204ENST00000354497 KIF15Q9NS87 1388 aa17.71■□□□□ 0.43
RTN3-204ENST00000354497 MSH6P52701 1360 aa17.71■□□□□ 0.42
RTN3-204ENST00000354497 PHLPP1O60346 1717 aa17.7■□□□□ 0.42
RTN3-204ENST00000354497 KANK1Q14678 1352 aa17.7■□□□□ 0.42
RTN3-204ENST00000354497 MYOM3Q5VTT5 1437 aa17.69■□□□□ 0.42
RTN3-204ENST00000354497 MEX3CQ5U5Q3 659 aaKnown RBP17.69■□□□□ 0.42
RTN3-204ENST00000354497 JCADQ9P266 1359 aa17.69■□□□□ 0.42
RTN3-204ENST00000354497 ERBINQ96RT1 1412 aa17.68■□□□□ 0.42
RTN3-204ENST00000354497 IDI1Q13907 227 aa17.67■□□□□ 0.42
RTN3-204ENST00000354497 SLAIN2Q9P270 581 aa17.67■□□□□ 0.42
RTN3-204ENST00000354497 NKTRP30414 1462 aaKnown RBP17.66■□□□□ 0.42
RTN3-204ENST00000354497 TRIM52Q96A61 297 aa17.66■□□□□ 0.42
RTN3-204ENST00000354497 KANK4Q5T7N3 995 aaPredicted RBP17.65■□□□□ 0.42
RTN3-204ENST00000354497 CNKSR2Q8WXI2 1034 aa17.65■□□□□ 0.42
RTN3-204ENST00000354497 TET3O43151 1660 aa17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms