RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 ZNF384Q8TF68 577 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 ST8SIA2Q92186 375 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 CAVIN3Q969G5 261 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 GFM2Q969S9 779 aaKnown RBP1.14□□□□□ -2.23
VPS35-212ENST00000640313 PPP1R14AQ96A00 147 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 PGBD4Q96DM1 585 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 ZNF512Q96ME7 567 aaPredicted RBP1.14□□□□□ -2.23
VPS35-212ENST00000640313 AMNQ9BXJ7 453 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 KCNH6Q9H252 994 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 IL23AQ9NPF7 189 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 ANKFY1Q9P2R3 1169 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 ZNF580Q9UK33 172 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 TLK1Q9UKI8 766 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 EFR3BQ9Y2G0 817 aa1.14□□□□□ -2.23
VPS35-212ENST00000640313 TCRBV5S4A2TA0A5A2 114 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 GAGE12BA1L429 117 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 WDR91A4D1P6 747 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 C2orf78A6NCI8 922 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 GAGE12HA6NDE8 117 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 LRRC3CA6NJW4 275 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 KRTAP9-6A8MVA2 160 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 PRR23D1E9PI22 279 aaPredicted RBP1.13□□□□□ -2.23
VPS35-212ENST00000640313 PRR23D2P0DMB1 279 aaPredicted RBP1.13□□□□□ -2.23
VPS35-212ENST00000640313 FOXG1P55316 489 aaPredicted RBP1.13□□□□□ -2.23
VPS35-212ENST00000640313 BPIFB4P59827 614 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 ACAP1Q15027 740 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 PPP2R5EQ16537 467 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 ABHD17BQ5VST6 288 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 RUSC1-AS1Q66K80 236 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 ATG9BQ674R7 924 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 C11orf87Q6NUJ2 197 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 LRSAM1Q6UWE0 723 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 DNAJC14Q6Y2X3 702 aaPredicted RBP1.13□□□□□ -2.23
VPS35-212ENST00000640313 CCDC81Q6ZN84 652 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 MAMDC2Q7Z304 686 aaPredicted RBP1.13□□□□□ -2.23
VPS35-212ENST00000640313 BRAPQ7Z569 592 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 APBB1IPQ7Z5R6 666 aaPredicted RBP1.13□□□□□ -2.23
VPS35-212ENST00000640313 CMTR2Q8IYT2 770 aaKnown RBP1.13□□□□□ -2.23
VPS35-212ENST00000640313 MB21D1Q8N884 522 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 ANKRD53Q8N9V6 530 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 RPL10LQ96L21 214 aaKnown RBP1.13□□□□□ -2.23
VPS35-212ENST00000640313 SPATA32Q96LK8 384 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 FAM193BQ96PV7 902 aaPredicted RBP1.13□□□□□ -2.23
VPS35-212ENST00000640313 KCNJ15Q99712 375 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 ZFYVE21Q9BQ24 234 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 DUSP26Q9BV47 211 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 CD244Q9BZW8 370 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 ZNF768Q9H5H4 540 aaKnown RBP1.13□□□□□ -2.23
VPS35-212ENST00000640313 GINM1Q9NU53 330 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 RIC8BQ9NVN3 520 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 SFMBT1Q9UHJ3 866 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 SRPK3Q9UPE1 567 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 LRP12Q9Y561 859 aa1.13□□□□□ -2.23
VPS35-212ENST00000640313 GOLGA8BA8MQT2 603 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 FAM47E-STBD1D6RA91 191 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 RNASET2O00584 256 aaKnown RBP1.12□□□□□ -2.23
VPS35-212ENST00000640313 BMP15O95972 392 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 C4BPAP04003 597 aaKnown RBP1.12□□□□□ -2.23
VPS35-212ENST00000640313 IGKV2-30P06310 120 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 CELA2AP08217 269 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 VSIG10L2P0DP72 767 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 EGR2P11161 476 aaPredicted RBP1.12□□□□□ -2.23
VPS35-212ENST00000640313 MC4RP32245 332 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 PTGER1P34995 402 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 PLA2G5P39877 138 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 RARRES1P49788 294 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 PTTG1IPP53801 180 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 CACNA2D1P54289 1103 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 KRTAP10-5P60370 271 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 FAM189BP81408 668 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 SSBP2P81877 361 aaPredicted RBP1.12□□□□□ -2.23
VPS35-212ENST00000640313 MPP3Q13368 585 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 TCIRG1Q13488 830 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 MRPL58Q14197 206 aaKnown RBP1.12□□□□□ -2.23
VPS35-212ENST00000640313 ZNF169Q14929 603 aaPredicted RBP1.12□□□□□ -2.23
VPS35-212ENST00000640313 BEAN1Q3B7T3 259 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 SV2CQ496J9 727 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 DLK2Q6UY11 383 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 LILRA3Q8N6C8 439 aaPredicted RBP1.12□□□□□ -2.23
VPS35-212ENST00000640313 PDPRQ8NCN5 879 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 DCAF4Q8WV16 495 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 KCTD13Q8WZ19 329 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 GCDHQ92947 438 aaPredicted RBP1.12□□□□□ -2.23
VPS35-212ENST00000640313 RGMAQ96B86 450 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 SHDQ96IW2 340 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 FCRL4Q96PJ5 515 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 DCLRE1CQ96SD1 692 aaKnown RBP1.12□□□□□ -2.23
VPS35-212ENST00000640313 PDCD2LQ9BRP1 358 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 WACQ9BTA9 647 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 PHF20Q9BVI0 1012 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 AKIP1Q9NQ31 210 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 UCKL1Q9NWZ5 548 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 LRP2BPQ9P2M1 347 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 RBM8AQ9Y5S9 174 aaKnown RBP1.12□□□□□ -2.23
VPS35-212ENST00000640313 ATP23Q9Y6H3 246 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 MAST3O60307 1309 aa1.12□□□□□ -2.23
VPS35-212ENST00000640313 WIPF3A6NGB9 483 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 H3BNC9 293 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 WNT9AO14904 365 aa1.11□□□□□ -2.23
VPS35-212ENST00000640313 DLX3O60479 287 aa1.11□□□□□ -2.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms