RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 UBE2QL1A1L167 161 aa4.62□□□□□ -1.67
SCN1A-208ENST00000625916 FAM20BO75063 409 aa4.62□□□□□ -1.67
SCN1A-208ENST00000625916 BMP5P22003 454 aa4.62□□□□□ -1.67
SCN1A-208ENST00000625916 PTGS2P35354 604 aa4.62□□□□□ -1.67
SCN1A-208ENST00000625916 IRF9Q00978 393 aa4.62□□□□□ -1.67
SCN1A-208ENST00000625916 TCIRG1Q13488 830 aa4.62□□□□□ -1.67
SCN1A-208ENST00000625916 LONRF2Q1L5Z9 754 aa4.62□□□□□ -1.67
SCN1A-208ENST00000625916 Q6ZPA2 131 aa4.62□□□□□ -1.67
SCN1A-208ENST00000625916 OVCH1Q7RTY7 1134 aa4.62□□□□□ -1.67
SCN1A-208ENST00000625916 RPUSD2Q8IZ73 545 aaKnown RBP4.62□□□□□ -1.67
SCN1A-208ENST00000625916 GPHA2Q96T91 129 aa4.62□□□□□ -1.67
SCN1A-208ENST00000625916 FOXB1Q99853 325 aa4.62□□□□□ -1.67
SCN1A-208ENST00000625916 TCF25Q9BQ70 676 aa4.62□□□□□ -1.67
SCN1A-208ENST00000625916 RCAN3Q9UKA8 241 aa4.62□□□□□ -1.67
SCN1A-208ENST00000625916 C2orf78A6NCI8 922 aa4.61□□□□□ -1.67
SCN1A-208ENST00000625916 TRAF5O00463 557 aa4.61□□□□□ -1.67
SCN1A-208ENST00000625916 KRT37O76014 449 aa4.61□□□□□ -1.67
SCN1A-208ENST00000625916 SMAD3P84022 425 aaKnown RBP4.61□□□□□ -1.67
SCN1A-208ENST00000625916 SLC6A3Q01959 620 aa4.61□□□□□ -1.67
SCN1A-208ENST00000625916 TOB2Q14106 344 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-208ENST00000625916 KRT40Q6A162 431 aa4.61□□□□□ -1.67
SCN1A-208ENST00000625916 OR5AN1Q8NGI8 311 aa4.61□□□□□ -1.67
SCN1A-208ENST00000625916 HAS1Q92839 578 aa4.61□□□□□ -1.67
SCN1A-208ENST00000625916 E2F7Q96AV8 911 aa4.61□□□□□ -1.67
SCN1A-208ENST00000625916 FOXRED1Q96CU9 486 aaPredicted RBP4.61□□□□□ -1.67
SCN1A-208ENST00000625916 SFMBT1Q9UHJ3 866 aa4.61□□□□□ -1.67
SCN1A-208ENST00000625916 RGS3P49796 1198 aa4.6□□□□□ -1.67
SCN1A-208ENST00000625916 ROM1Q03395 351 aa4.6□□□□□ -1.67
SCN1A-208ENST00000625916 DGKDQ16760 1214 aa4.6□□□□□ -1.67
SCN1A-208ENST00000625916 ZC3H12BQ5HYM0 836 aaKnown RBP4.6□□□□□ -1.67
SCN1A-208ENST00000625916 FKBP15Q5T1M5 1219 aa4.6□□□□□ -1.67
SCN1A-208ENST00000625916 CC2D1AQ6P1N0 951 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-208ENST00000625916 RTN4RL1Q86UN2 441 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-208ENST00000625916 SYNE4Q8N205 404 aa4.6□□□□□ -1.67
SCN1A-208ENST00000625916 MB21D1Q8N884 522 aa4.6□□□□□ -1.67
SCN1A-208ENST00000625916 IGSF22Q8N9C0 903 aa4.6□□□□□ -1.67
SCN1A-208ENST00000625916 GSTCDQ8NEC7 633 aa4.6□□□□□ -1.67
SCN1A-208ENST00000625916 SLC7A14Q8TBB6 771 aa4.6□□□□□ -1.67
SCN1A-208ENST00000625916 SLC25A43Q8WUT9 341 aaPredicted RBP4.6□□□□□ -1.67
SCN1A-208ENST00000625916 ATXN2LQ8WWM7 1075 aaKnown RBP4.6□□□□□ -1.67
SCN1A-208ENST00000625916 ARL8AQ96BM9 186 aa4.6□□□□□ -1.67
SCN1A-208ENST00000625916 PGBD4Q96DM1 585 aa4.6□□□□□ -1.67
SCN1A-208ENST00000625916 IL23AQ9NPF7 189 aa4.6□□□□□ -1.67
SCN1A-208ENST00000625916 SIRPGQ9P1W8 387 aa4.6□□□□□ -1.67
SCN1A-208ENST00000625916 XDHP47989 1333 aa4.6□□□□□ -1.67
SCN1A-208ENST00000625916 GOLGA6L6A8MZA4 724 aa4.59□□□□□ -1.67
SCN1A-208ENST00000625916 MFAP3LO75121 409 aa4.59□□□□□ -1.67
SCN1A-208ENST00000625916 NPTXRO95502 500 aa4.59□□□□□ -1.67
SCN1A-208ENST00000625916 GCP02774 474 aa4.59□□□□□ -1.67
SCN1A-208ENST00000625916 ANTXR2P58335 489 aa4.59□□□□□ -1.67
SCN1A-208ENST00000625916 GAGE13Q4V321 117 aa4.59□□□□□ -1.67
SCN1A-208ENST00000625916 TMEM177Q53S58 311 aa4.59□□□□□ -1.67
SCN1A-208ENST00000625916 RABL3Q5HYI8 236 aa4.59□□□□□ -1.67
SCN1A-208ENST00000625916 NBPF6Q5VWK0 638 aa4.59□□□□□ -1.67
SCN1A-208ENST00000625916 MFSD5Q6N075 450 aa4.59□□□□□ -1.67
SCN1A-208ENST00000625916 MRGPREQ86SM8 312 aa4.59□□□□□ -1.67
SCN1A-208ENST00000625916 ELOA2Q8IYF1 753 aaPredicted RBP4.59□□□□□ -1.67
SCN1A-208ENST00000625916 ZNF276Q8N554 614 aa4.59□□□□□ -1.67
SCN1A-208ENST00000625916 SCLYQ96I15 445 aa4.59□□□□□ -1.67
SCN1A-208ENST00000625916 NBPF4Q96M43 638 aa4.59□□□□□ -1.67
SCN1A-208ENST00000625916 BOCQ9BWV1 1114 aa4.59□□□□□ -1.67
SCN1A-208ENST00000625916 NCDNQ9UBB6 729 aa4.59□□□□□ -1.67
SCN1A-208ENST00000625916 TCRBV16S1A1N1A0A5B0 115 aa4.58□□□□□ -1.68
SCN1A-208ENST00000625916 IPO13O94829 963 aaKnown RBP4.58□□□□□ -1.68
SCN1A-208ENST00000625916 TOX4O94842 621 aa4.58□□□□□ -1.68
SCN1A-208ENST00000625916 RHOBTB3O94955 611 aa4.58□□□□□ -1.68
SCN1A-208ENST00000625916 PRLP01236 227 aa4.58□□□□□ -1.68
SCN1A-208ENST00000625916 VSIG10L2P0DP72 767 aa4.58□□□□□ -1.68
SCN1A-208ENST00000625916 ADAM8P78325 824 aa4.58□□□□□ -1.68
SCN1A-208ENST00000625916 COL10A1Q03692 680 aa4.58□□□□□ -1.68
SCN1A-208ENST00000625916 MBNL2Q5VZF2 373 aaKnown RBP4.58□□□□□ -1.68
SCN1A-208ENST00000625916 SLFN12LQ6IEE8 588 aa4.58□□□□□ -1.68
SCN1A-208ENST00000625916 BRAPQ7Z569 592 aa4.58□□□□□ -1.68
SCN1A-208ENST00000625916 HOMEZQ8IX15 550 aa4.58□□□□□ -1.68
SCN1A-208ENST00000625916 PLA2G15Q8NCC3 412 aa4.58□□□□□ -1.68
SCN1A-208ENST00000625916 WDR92Q96MX6 357 aa4.58□□□□□ -1.68
SCN1A-208ENST00000625916 MNTQ99583 582 aa4.58□□□□□ -1.68
SCN1A-208ENST00000625916 UBA6A0AVT1 1052 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-208ENST00000625916 KLRG2A4D1S0 409 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-208ENST00000625916 DAPK3O43293 454 aa4.57□□□□□ -1.68
SCN1A-208ENST00000625916 NUDT3O95989 172 aa4.57□□□□□ -1.68
SCN1A-208ENST00000625916 ZBTB48P10074 688 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-208ENST00000625916 ATP2B1P20020 1258 aa4.57□□□□□ -1.68
SCN1A-208ENST00000625916 FNTBP49356 437 aa4.57□□□□□ -1.68
SCN1A-208ENST00000625916 KIF11P52732 1056 aa4.57□□□□□ -1.68
SCN1A-208ENST00000625916 RABGGTBP53611 331 aa4.57□□□□□ -1.68
SCN1A-208ENST00000625916 TRIM61Q5EBN2 209 aa4.57□□□□□ -1.68
SCN1A-208ENST00000625916 PRAMEF9Q5VWM5 478 aa4.57□□□□□ -1.68
SCN1A-208ENST00000625916 ABHD17CQ6PCB6 329 aa4.57□□□□□ -1.68
SCN1A-208ENST00000625916 NKD2Q969F2 451 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-208ENST00000625916 ZNF428Q96B54 188 aa4.57□□□□□ -1.68
SCN1A-208ENST00000625916 DYDC2Q96IM9 177 aa4.57□□□□□ -1.68
SCN1A-208ENST00000625916 MAML3Q96JK9 1138 aa4.57□□□□□ -1.68
SCN1A-208ENST00000625916 POLR3BQ9NW08 1133 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-208ENST00000625916 KCMF1Q9P0J7 381 aa4.57□□□□□ -1.68
SCN1A-208ENST00000625916 DNAI1Q9UI46 699 aa4.57□□□□□ -1.68
SCN1A-208ENST00000625916 TNFRSF18Q9Y5U5 241 aa4.57□□□□□ -1.68
SCN1A-208ENST00000625916 PCSK5Q92824 1860 aa4.56□□□□□ -1.68
SCN1A-208ENST00000625916 JUNP05412 331 aaKnown RBP4.56□□□□□ -1.68
SCN1A-208ENST00000625916 KCNA6P17658 529 aa4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 39 ms