RNA–Protein interactions for RNA: ENST00000613099.4

VPS13D-213, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS13D, Length 16,245 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-213ENST00000613099 CCT6BQ92526 530 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 MKL1Q969V6 931 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 SMYD3Q9H7B4 428 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 UGGT1Q9NYU2 1555 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 WASHC5Q12768 1159 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 DDX18Q9NVP1 670 aaKnown RBP5.28□□□□□ -1.56
VPS13D-213ENST00000613099 WDR35Q9P2L0 1181 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 ANAPC5Q9UJX4 755 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 FADS3Q9Y5Q0 445 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 RPAP1Q9BWH6 1393 aaPredicted RBP5.28□□□□□ -1.56
VPS13D-213ENST00000613099 SPDYE3A6NKU9 549 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 SLC27A2O14975 620 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 DAB2P98082 770 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 LPCAT2Q7L5N7 544 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 GRPEL2Q8TAA5 225 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 TRPC4APQ8TEL6 797 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 TELO2Q9Y4R8 837 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 IFNA16P05015 189 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 IFNA8P32881 189 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 DLG4P78352 724 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 RABGAP1LQ5R372 815 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 NHEJ1Q9H9Q4 299 aaPredicted RBP5.28□□□□□ -1.56
VPS13D-213ENST00000613099 KRT37O76014 449 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 NFKBIAP25963 317 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 CARSP49589 748 aaKnown RBP5.28□□□□□ -1.56
VPS13D-213ENST00000613099 PRMT1Q99873 361 aaKnown RBP5.28□□□□□ -1.56
VPS13D-213ENST00000613099 MRPS26Q9BYN8 205 aaKnown RBP5.28□□□□□ -1.56
VPS13D-213ENST00000613099 DPPA5A6NC42 116 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 DNALI1O14645 258 aaPredicted RBP5.28□□□□□ -1.56
VPS13D-213ENST00000613099 STX7O15400 261 aaKnown RBP5.28□□□□□ -1.56
VPS13D-213ENST00000613099 SNX16P57768 344 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 KCNA1Q09470 495 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 SGSM1Q2NKQ1 1148 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 ZNF274Q96GC6 653 aaPredicted RBP5.28□□□□□ -1.56
VPS13D-213ENST00000613099 EPS8L2Q9H6S3 715 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 HACD3Q9P035 362 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 ZMYM2Q9UBW7 1377 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 CFAP69A5D8W1 941 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 TMOD1P28289 359 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 ZNF394Q53GI3 561 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 HDDC2Q7Z4H3 204 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 KRT73Q86Y46 540 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 CHPF2Q9P2E5 772 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 H3BNX3 289 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 FKBP4Q02790 459 aaKnown RBP eCLIP5.28□□□□□ -1.56
VPS13D-213ENST00000613099 LUZP2Q86TE4 346 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 TTC39CQ8N584 583 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 SCG3Q8WXD2 468 aaKnown RBP5.28□□□□□ -1.56
VPS13D-213ENST00000613099 VTI1AQ96AJ9 217 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 ZNF232Q9UNY5 417 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 SQORQ9Y6N5 450 aa5.28□□□□□ -1.56
VPS13D-213ENST00000613099 FAM187AA6NFU0 413 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 PARNO95453 639 aaKnown RBP5.27□□□□□ -1.57
VPS13D-213ENST00000613099 CPA3P15088 417 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 TWF2Q6IBS0 349 aaKnown RBP5.27□□□□□ -1.57
VPS13D-213ENST00000613099 SH2D3CQ8N5H7 860 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 PYROXD1Q8WU10 500 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 MAML1Q92585 1016 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 FAXDC2Q96IV6 333 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 WBP11Q9Y2W2 641 aaKnown RBP5.27□□□□□ -1.57
VPS13D-213ENST00000613099 ADGRA3Q8IWK6 1321 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 ERCC6L2Q5T890 1561 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 VAV1P15498 845 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 COPG2Q9UBF2 871 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 ZBBXA8MT70 800 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 ASS1P00966 412 aaKnown RBP5.27□□□□□ -1.57
VPS13D-213ENST00000613099 SNX17Q15036 470 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 PLD3Q8IV08 490 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 DTX3LQ8TDB6 740 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 ACMSDQ8TDX5 336 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 MTBPQ96DY7 904 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 MAGEF1Q9HAY2 307 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 IFT122Q9HBG6 1241 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 ZNF212Q9UDV6 495 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 APOL1O14791 398 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 ARHGEF6Q15052 776 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 TTC27Q6P3X3 843 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 DSTYKQ6XUX3 929 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 GATAD2AQ86YP4 633 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 PAIP1Q9H074 479 aaKnown RBP5.27□□□□□ -1.57
VPS13D-213ENST00000613099 STRIP2Q9ULQ0 834 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 PEX14O75381 377 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 PTDSS1P48651 473 aaKnown RBP5.27□□□□□ -1.57
VPS13D-213ENST00000613099 LPIN1Q14693 890 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 TJAP1Q5JTD0 557 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 THAP9Q9H5L6 903 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 ZNF652Q9Y2D9 606 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 ATP6V1B1P15313 513 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 GALNT6Q8NCL4 622 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 C1orf131Q8NDD1 294 aaKnown RBP5.27□□□□□ -1.57
VPS13D-213ENST00000613099 TTC25Q96NG3 672 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 HINFPQ9BQA5 517 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 C8orf4Q9NR00 106 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 ARHGEF38Q9NXL2 777 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 CCDC59Q9P031 241 aaKnown RBP5.27□□□□□ -1.57
VPS13D-213ENST00000613099 MTMR7Q9Y216 660 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 ESYT2A0FGR8 921 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 ATN1P54259 1190 aaPredicted RBP5.27□□□□□ -1.57
VPS13D-213ENST00000613099 LRRC63Q05C16 580 aa5.27□□□□□ -1.57
VPS13D-213ENST00000613099 LRRC39Q96DD0 335 aa5.27□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms