RNA–Protein interactions for RNA: ENST00000591239.1

DNMT1-223, Transcript of DNA methyltransferase 1, human

TSL 2

Gene DNMT1, Length 550 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DNMT1-223	ENST00000591239	CDC42EP1	Q00587	391 aa		10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239	CACNB1	Q02641	598 aa	Predicted RBP	10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239	RILPL1	Q5EBL4	403 aa		10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239	FAM43B	Q6ZT52	329 aa	Predicted RBP	10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239	FAM228A	Q86W67	206 aa		10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239	CATSPER3	Q86XQ3	398 aa		10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239	PLCD3	Q8N3E9	789 aa		10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239	PIGO	Q8TEQ8	1089 aa		10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239	NLRP7	Q8WX94	980 aa		10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239	LINC01599	Q8WXQ3	324 aa		10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239	INTS4	Q96HW7	963 aa	Known RBP	10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239	ZNF668	Q96K58	619 aa	Predicted RBP	10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239	SCLT1	Q96NL6	688 aa		10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239	YME1L1	Q96TA2	773 aa		10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239	POLR3C	Q9BUI4	534 aa	Predicted RBP	10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239	TSPYL2	Q9H2G4	693 aa	Predicted RBP	10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239	ANKEF1	Q9NU02	776 aa		10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239	SUCLA2	Q9P2R7	463 aa	Predicted RBP	10.27	□□□□□ -0.77
DNMT1-223	ENST00000591239		A0A087WWV3	80 aa		10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	DENND3	A2RUS2	1198 aa		10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	LINC01553	A4QN01	128 aa		10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	LAD1	O00515	517 aa		10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	GAS2	O43903	313 aa	Known RBP	10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	MGEA5	O60502	916 aa		10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	MED24	O75448	989 aa		10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	DARS	P14868	501 aa	Known RBP	10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	RPA1	P27694	616 aa		10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	RFC5	P40937	340 aa		10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	PDIA5	Q14554	519 aa		10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	SPRED2	Q7Z698	418 aa		10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	RHPN2	Q8IUC4	686 aa		10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	KSR1	Q8IVT5	923 aa		10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	ERMN	Q8TAM6	284 aa		10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	SNX21	Q969T3	373 aa		10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	GAS2L1	Q99501	681 aa	Predicted RBP	10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	ADAM2	Q99965	735 aa		10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	CERS4	Q9HA82	394 aa		10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	TUFT1	Q9NNX1	390 aa		10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239	TTC3	P53804	2025 aa		10.26	□□□□□ -0.77
DNMT1-223	ENST00000591239		A0A087WZ62	844 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	VPS37C	A5D8V6	355 aa	Predicted RBP	10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	EPOP	A6NHQ4	379 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	CSDE1	O75534	798 aa	Known RBP	10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	XRCC6	P12956	609 aa	Known RBP eCLIP	10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	PRPH	P41219	470 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	RARRES1	P49788	294 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	ADGRE1	Q14246	886 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	EMC2	Q15006	297 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	DTHD1	Q6ZMT9	781 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	SLC24A5	Q71RS6	500 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	BRAP	Q7Z569	592 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	ZNF410	Q86VK4	478 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	NPAS4	Q8IUM7	802 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	CRIPAK	Q8N1N5	446 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	IGSF22	Q8N9C0	903 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	SP7	Q8TDD2	431 aa	Predicted RBP	10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	TCP11	Q8WWU5	503 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	PRPF31	Q8WWY3	499 aa	Known RBP	10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	PSPC1	Q8WXF1	523 aa	Known RBP	10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	ARNTL2	Q8WYA1	636 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	TMEM143	Q96AN5	459 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	NLRP4	Q96MN2	994 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	CCDC43	Q96MW1	224 aa	Known RBP	10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	NACC1	Q96RE7	527 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	TGS1	Q96RS0	853 aa	Known RBP	10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	FDXACB1	Q9BRP7	624 aa	Predicted RBP	10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	GCOM2	Q9BZD3	368 aa	Predicted RBP	10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	RAB34	Q9BZG1	259 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	RGS18	Q9NS28	235 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	BMP2K	Q9NSY1	1161 aa	Predicted RBP	10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	LRWD1	Q9UFC0	647 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239	COL4A3BP	Q9Y5P4	624 aa		10.25	□□□□□ -0.77
DNMT1-223	ENST00000591239		C9IYK1	514 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	RFXAP	O00287	272 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	DGAT1	O75907	488 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	DGKI	O75912	1065 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	STAG3L1	P0CL83	205 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	SRGAP2C	P0DJJ0	459 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	SYT1	P21579	422 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	MUT	P22033	750 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	FGFR4	P22455	802 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	IGFBP4	P22692	258 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	CCT6A	P40227	531 aa	Known RBP	10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	SARS	P49591	514 aa	Known RBP	10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	ERVK-21	P61565	698 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	ATP2C1	P98194	919 aa	Predicted RBP	10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	LAMTOR4	Q0VGL1	99 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	DSC3	Q14574	896 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	IL17A	Q16552	155 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	HAUS3	Q68CZ6	603 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	POTEG	Q6S5H5	508 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	FERMT3	Q86UX7	667 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	MAFA	Q8NHW3	353 aa	Predicted RBP	10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	ZNF689	Q96CS4	500 aa	Predicted RBP	10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	MTR	Q99707	1265 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	INO80B	Q9C086	356 aa	Predicted RBP	10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	IFT122	Q9HBG6	1241 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	XPNPEP1	Q9NQW7	623 aa		10.24	□□□□□ -0.77
DNMT1-223	ENST00000591239	C1orf112	Q9NSG2	853 aa		10.24	□□□□□ -0.77

Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms