RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 GCOM2Q9BZD3 368 aaPredicted RBP21.74■■□□□ 1.07
SS18-209ENST00000578595 ERVK-5Q9HDB9 667 aa21.74■■□□□ 1.07
SS18-209ENST00000578595 MTUS1Q9ULD2 1270 aa21.74■■□□□ 1.07
SS18-209ENST00000578595 PPME1Q9Y570 386 aa21.74■■□□□ 1.07
SS18-209ENST00000578595 INSL6Q9Y581 213 aa21.74■■□□□ 1.07
SS18-209ENST00000578595 KIAA1671Q9BY89 1806 aa21.73■■□□□ 1.07
SS18-209ENST00000578595 ENPP3O14638 875 aa21.73■■□□□ 1.07
SS18-209ENST00000578595 USO1O60763 962 aaKnown RBP21.73■■□□□ 1.07
SS18-209ENST00000578595 FXR2P51116 673 aaKnown RBP eCLIP21.73■■□□□ 1.07
SS18-209ENST00000578595 MKRN4PQ13434 485 aaPredicted RBP21.73■■□□□ 1.07
SS18-209ENST00000578595 ZRSR1Q15695 479 aaKnown RBP21.73■■□□□ 1.07
SS18-209ENST00000578595 CATSPER3Q86XQ3 398 aa21.73■■□□□ 1.07
SS18-209ENST00000578595 ZNF710Q8N1W2 664 aa21.73■■□□□ 1.07
SS18-209ENST00000578595 TCP11Q8WWU5 503 aa21.73■■□□□ 1.07
SS18-209ENST00000578595 PSPC1Q8WXF1 523 aaKnown RBP21.73■■□□□ 1.07
SS18-209ENST00000578595 LINC01599Q8WXQ3 324 aa21.73■■□□□ 1.07
SS18-209ENST00000578595 TOP1MTQ969P6 601 aa21.73■■□□□ 1.07
SS18-209ENST00000578595 ATP6V0A4Q9HBG4 840 aa21.73■■□□□ 1.07
SS18-209ENST00000578595 ANKEF1Q9NU02 776 aa21.73■■□□□ 1.07
SS18-209ENST00000578595 LRFN2Q9ULH4 789 aa21.73■■□□□ 1.07
SS18-209ENST00000578595 COL4A3BPQ9Y5P4 624 aa21.73■■□□□ 1.07
SS18-209ENST00000578595 A0A087WZ62 844 aa21.72■■□□□ 1.07
SS18-209ENST00000578595 IGKV6-21A0A0C4DH24 114 aa21.72■■□□□ 1.07
SS18-209ENST00000578595 LYPLA2O95372 231 aa21.72■■□□□ 1.07
SS18-209ENST00000578595 SYT1P21579 422 aa21.72■■□□□ 1.07
SS18-209ENST00000578595 FGFR4P22455 802 aa21.72■■□□□ 1.07
SS18-209ENST00000578595 IGFBP4P22692 258 aa21.72■■□□□ 1.07
SS18-209ENST00000578595 EIF4BP23588 611 aaKnown RBP21.72■■□□□ 1.07
SS18-209ENST00000578595 KSR1Q8IVT5 923 aa21.72■■□□□ 1.07
SS18-209ENST00000578595 C4orf32Q8N8J7 132 aa21.72■■□□□ 1.07
SS18-209ENST00000578595 SPRYD3Q8NCJ5 442 aa21.72■■□□□ 1.07
SS18-209ENST00000578595 ADAM2Q99965 735 aa21.72■■□□□ 1.07
SS18-209ENST00000578595 FDXACB1Q9BRP7 624 aaPredicted RBP21.72■■□□□ 1.07
SS18-209ENST00000578595 POLR3CQ9BUI4 534 aaPredicted RBP21.72■■□□□ 1.07
SS18-209ENST00000578595 ADAMTS10Q9H324 1103 aa21.72■■□□□ 1.07
SS18-209ENST00000578595 TMX1Q9H3N1 280 aa21.72■■□□□ 1.07
SS18-209ENST00000578595 DHX33Q9H6R0 707 aaKnown RBP21.72■■□□□ 1.07
SS18-209ENST00000578595 STXBP5LQ9Y2K9 1186 aa21.72■■□□□ 1.07
SS18-209ENST00000578595 FNDC1Q4ZHG4 1894 aaPredicted RBP21.72■■□□□ 1.07
SS18-209ENST00000578595 VWA3AA6NCI4 1184 aa21.71■■□□□ 1.07
SS18-209ENST00000578595 GAS2O43903 313 aaKnown RBP21.71■■□□□ 1.07
SS18-209ENST00000578595 CSDE1O75534 798 aaKnown RBP21.71■■□□□ 1.07
SS18-209ENST00000578595 ARHGEF15O94989 841 aa21.71■■□□□ 1.07
SS18-209ENST00000578595 SPATA31C1P0DKV0 1188 aa21.71■■□□□ 1.07
SS18-209ENST00000578595 DARSP14868 501 aaKnown RBP21.71■■□□□ 1.07
SS18-209ENST00000578595 ZSCAN20P17040 1043 aaPredicted RBP21.71■■□□□ 1.07
SS18-209ENST00000578595 RARRES1P49788 294 aa21.71■■□□□ 1.07
SS18-209ENST00000578595 CDC42EP1Q00587 391 aa21.71■■□□□ 1.07
SS18-209ENST00000578595 TAP1Q03518 808 aa21.71■■□□□ 1.07
SS18-209ENST00000578595 KRT79Q5XKE5 535 aa21.71■■□□□ 1.07
SS18-209ENST00000578595 NACC1Q96RE7 527 aa21.71■■□□□ 1.07
SS18-209ENST00000578595 ARHGEF35A5YM69 484 aa21.7■■□□□ 1.06
SS18-209ENST00000578595 PP2D1A8MPX8 630 aa21.7■■□□□ 1.06
SS18-209ENST00000578595 DGAT1O75907 488 aa21.7■■□□□ 1.06
SS18-209ENST00000578595 STAG3L1P0CL83 205 aa21.7■■□□□ 1.06
SS18-209ENST00000578595 SRGAP2CP0DJJ0 459 aa21.7■■□□□ 1.06
SS18-209ENST00000578595 SFPQP23246 707 aaKnown RBP eCLIP21.7■■□□□ 1.06
SS18-209ENST00000578595 RPA1P27694 616 aa21.7■■□□□ 1.06
SS18-209ENST00000578595 PRPHP41219 470 aa21.7■■□□□ 1.06
SS18-209ENST00000578595 ATP2C1P98194 919 aaPredicted RBP21.7■■□□□ 1.06
SS18-209ENST00000578595 MAEAQ7L5Y9 396 aa21.7■■□□□ 1.06
SS18-209ENST00000578595 ZNF410Q86VK4 478 aa21.7■■□□□ 1.06
SS18-209ENST00000578595 PRPF31Q8WWY3 499 aaKnown RBP21.7■■□□□ 1.06
SS18-209ENST00000578595 INO80BQ9C086 356 aaPredicted RBP21.7■■□□□ 1.06
SS18-209ENST00000578595 TSPYL2Q9H2G4 693 aaPredicted RBP21.7■■□□□ 1.06
SS18-209ENST00000578595 STK24Q9Y6E0 443 aa21.7■■□□□ 1.06
SS18-209ENST00000578595 LINC01553A4QN01 128 aa21.69■■□□□ 1.06
SS18-209ENST00000578595 MGEA5O60502 916 aa21.69■■□□□ 1.06
SS18-209ENST00000578595 CATSPER4Q7RTX7 472 aa21.69■■□□□ 1.06
SS18-209ENST00000578595 NPAS4Q8IUM7 802 aa21.69■■□□□ 1.06
SS18-209ENST00000578595 MICALL1Q8N3F8 863 aa21.69■■□□□ 1.06
SS18-209ENST00000578595 C1orf112Q9NSG2 853 aa21.69■■□□□ 1.06
SS18-209ENST00000578595 KIAA1024Q9UPX6 916 aa21.69■■□□□ 1.06
SS18-209ENST00000578595 CHD9Q3L8U1 2897 aa21.69■■□□□ 1.06
SS18-209ENST00000578595 STX6O43752 255 aa21.68■■□□□ 1.06
SS18-209ENST00000578595 CDC25AP30304 524 aa21.68■■□□□ 1.06
SS18-209ENST00000578595 HTRA4P83105 476 aaPredicted RBP21.68■■□□□ 1.06
SS18-209ENST00000578595 LAMTOR4Q0VGL1 99 aa21.68■■□□□ 1.06
SS18-209ENST00000578595 PDIA5Q14554 519 aa21.68■■□□□ 1.06
SS18-209ENST00000578595 PAN2Q504Q3 1202 aaKnown RBP21.68■■□□□ 1.06
SS18-209ENST00000578595 SPRED2Q7Z698 418 aa21.68■■□□□ 1.06
SS18-209ENST00000578595 RTN4RL1Q86UN2 441 aaPredicted RBP21.68■■□□□ 1.06
SS18-209ENST00000578595 IGSF22Q8N9C0 903 aa21.68■■□□□ 1.06
SS18-209ENST00000578595 RNF149Q8NC42 400 aa21.68■■□□□ 1.06
SS18-209ENST00000578595 CDK5RAP3Q96JB5 506 aa21.68■■□□□ 1.06
SS18-209ENST00000578595 TGS1Q96RS0 853 aaKnown RBP21.68■■□□□ 1.06
SS18-209ENST00000578595 POLR3FQ9H1D9 316 aaPredicted RBP21.68■■□□□ 1.06
SS18-209ENST00000578595 XPNPEP1Q9NQW7 623 aa21.68■■□□□ 1.06
SS18-209ENST00000578595 DDX19AQ9NUU7 478 aaKnown RBP21.68■■□□□ 1.06
SS18-209ENST00000578595 PCDHB7Q9Y5E2 793 aa21.68■■□□□ 1.06
SS18-209ENST00000578595 ADGRA3Q8IWK6 1321 aa21.68■■□□□ 1.06
SS18-209ENST00000578595 PRRC2BQ5JSZ5 2229 aaKnown RBP21.68■■□□□ 1.06
SS18-209ENST00000578595 RFXAPO00287 272 aa21.67■■□□□ 1.06
SS18-209ENST00000578595 BMP15O95972 392 aa21.67■■□□□ 1.06
SS18-209ENST00000578595 PHKA2P46019 1235 aa21.67■■□□□ 1.06
SS18-209ENST00000578595 SARSP49591 514 aaKnown RBP21.67■■□□□ 1.06
SS18-209ENST00000578595 TFDP1Q14186 410 aa21.67■■□□□ 1.06
SS18-209ENST00000578595 BTG3Q14201 252 aaPredicted RBP21.67■■□□□ 1.06
SS18-209ENST00000578595 SF3A1Q15459 793 aaKnown RBP21.67■■□□□ 1.06
SS18-209ENST00000578595 FOXD4L5Q5VV16 416 aaPredicted RBP21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms