RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 IFIT3O14879 490 aaKnown RBP11.69□□□□□ -0.54
CLK3-226ENST00000569406 FOXN1O15353 648 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 MYZAPP0CAP1 466 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 NCALDP61601 193 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 PDE1BQ01064 536 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 SAFBQ15424 915 aaKnown RBP eCLIP11.69□□□□□ -0.54
CLK3-226ENST00000569406 KLC3Q6P597 504 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 C1orf228Q6PIY5 440 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 MFSD6Q6ZSS7 791 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 CACNA2D4Q7Z3S7 1137 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 MYO1HQ8N1T3 1032 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 MORC4Q8TE76 937 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 UIMC1Q96RL1 719 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 NAA15Q9BXJ9 866 aaKnown RBP11.69□□□□□ -0.54
CLK3-226ENST00000569406 KCNMB3Q9NPA1 279 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 CTNNAL1Q9UBT7 734 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 ZBTB21Q9ULJ3 1066 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 NFU1Q9UMS0 254 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 KCNJ14Q9UNX9 436 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 TFR2Q9UP52 801 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 DDX52Q9Y2R4 599 aaKnown RBP eCLIP11.69□□□□□ -0.54
CLK3-226ENST00000569406 BAZ2BQ9UIF8 2168 aaKnown RBP11.69□□□□□ -0.54
CLK3-226ENST00000569406 MYPNQ86TC9 1320 aa11.69□□□□□ -0.54
CLK3-226ENST00000569406 ESYT3A0FGR9 886 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 FAM205CA6NFA0 338 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 CTNND1O60716 968 aaKnown RBP11.68□□□□□ -0.54
CLK3-226ENST00000569406 ATP9AO75110 1047 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 VEGFAP15692 232 aaPredicted RBP11.68□□□□□ -0.54
CLK3-226ENST00000569406 STX17P56962 302 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 CYP4A11Q02928 519 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 RNASELQ05823 741 aaKnown RBP11.68□□□□□ -0.54
CLK3-226ENST00000569406 NR5A1Q13285 461 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 FAM182BQ5T319 152 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 ZFYVE27Q5T4F4 411 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 CCDC24Q8N4L8 307 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 IFT74Q96LB3 600 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 LBHD1Q9BQE6 289 aaPredicted RBP11.68□□□□□ -0.54
CLK3-226ENST00000569406 CTTNBP2NLQ9P2B4 639 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 DDX25Q9UHL0 483 aaKnown RBP11.68□□□□□ -0.54
CLK3-226ENST00000569406 CD2APQ9Y5K6 639 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 COMMD3-BMI1R4GMX3 469 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 OXSR1O95747 527 aaPredicted RBP11.68□□□□□ -0.54
CLK3-226ENST00000569406 ACADSP16219 412 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 CYP7A1P22680 504 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 SULT2A1Q06520 285 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 TROAPQ12815 778 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 USP6NLQ92738 828 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 TNFRSF25Q93038 417 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 CHMP6Q96FZ7 201 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 XPO6Q96QU8 1125 aaKnown RBP11.68□□□□□ -0.54
CLK3-226ENST00000569406 PSMB7Q99436 277 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 CNNM2Q9H8M5 875 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 NARFQ9UHQ1 456 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 SLC4A7Q9Y6M7 1214 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 UTRNP46939 3433 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 A6NJR5 290 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 SRRM3A6NNA2 597 aaPredicted RBP11.68□□□□□ -0.54
CLK3-226ENST00000569406 F8W031 263 aaPredicted RBP11.68□□□□□ -0.54
CLK3-226ENST00000569406 PDE5AO76074 875 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 DRD4P21917 467 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 IARSP41252 1262 aaKnown RBP11.68□□□□□ -0.54
CLK3-226ENST00000569406 CCDC6Q16204 474 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 KCTD21Q4G0X4 260 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 LRRC8BQ6P9F7 803 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 TRMT44Q8IYL2 757 aaKnown RBP11.68□□□□□ -0.54
CLK3-226ENST00000569406 OR2W6PQ8NHA6 318 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 NELFBQ8WX92 580 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 DHTKD1Q96HY7 919 aaPredicted RBP11.68□□□□□ -0.54
CLK3-226ENST00000569406 SLC26A6Q9BXS9 759 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 MAK16Q9BXY0 300 aaKnown RBP11.68□□□□□ -0.54
CLK3-226ENST00000569406 KRT23Q9C075 422 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 MIS12Q9H081 205 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 BTBD7Q9P203 1132 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 FBXO2Q9UK22 296 aaPredicted RBP11.68□□□□□ -0.54
CLK3-226ENST00000569406 SLC12A7Q9Y666 1083 aa11.68□□□□□ -0.54
CLK3-226ENST00000569406 C5orf60A6NFR6 353 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 FAM153BP0C7A2 387 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 CALB2P22676 271 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 SHROOM1Q2M3G4 852 aaPredicted RBP11.67□□□□□ -0.54
CLK3-226ENST00000569406 FAM153CQ494X1 144 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 SPATA24Q86W54 205 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 NOSTRINQ8IVI9 506 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 IQCKQ8N0W5 287 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 FANCBQ8NB91 859 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 PCMTD1Q96MG8 357 aaPredicted RBP11.67□□□□□ -0.54
CLK3-226ENST00000569406 NUDCD1Q96RS6 583 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 FAM153AQ9UHL3 310 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 NFE2L3Q9Y4A8 694 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 PORP16435 677 aaPredicted RBP11.67□□□□□ -0.54
CLK3-226ENST00000569406 PTDSS1P48651 473 aaKnown RBP11.67□□□□□ -0.54
CLK3-226ENST00000569406 GPSM2P81274 684 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 GRIK5Q16478 980 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 ZNF827Q17R98 1081 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 BPHLQ86WA6 291 aaPredicted RBP11.67□□□□□ -0.54
CLK3-226ENST00000569406 ZNF654Q8IZM8 581 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 GDAP1Q8TB36 358 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 MDM1Q8TC05 714 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 LRP2BPQ9P2M1 347 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 TNKSO95271 1327 aa11.67□□□□□ -0.54
CLK3-226ENST00000569406 PDS5AQ29RF7 1337 aaKnown RBP11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms