RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 PPP2R3BQ9Y5P8 575 aa6.64□□□□□ -1.35
VPS35-204ENST00000563884 ADGRA2Q96PE1 1338 aa6.64□□□□□ -1.35
VPS35-204ENST00000563884 COL4A1P02462 1669 aa6.64□□□□□ -1.35
VPS35-204ENST00000563884 BUB1BO60566 1050 aaPredicted RBP6.63□□□□□ -1.35
VPS35-204ENST00000563884 GTF2A2P52657 109 aa6.63□□□□□ -1.35
VPS35-204ENST00000563884 CAP1Q01518 475 aa6.63□□□□□ -1.35
VPS35-204ENST00000563884 CBX2Q14781 532 aaPredicted RBP6.63□□□□□ -1.35
VPS35-204ENST00000563884 TMEM31Q5JXX7 168 aa6.63□□□□□ -1.35
VPS35-204ENST00000563884 RTP2Q5QGT7 225 aa6.63□□□□□ -1.35
VPS35-204ENST00000563884 NOL9Q5SY16 702 aaKnown RBP6.63□□□□□ -1.35
VPS35-204ENST00000563884 TDRD10Q5VZ19 366 aaKnown RBP6.63□□□□□ -1.35
VPS35-204ENST00000563884 FBXW10Q5XX13 1052 aa6.63□□□□□ -1.35
VPS35-204ENST00000563884 HLA-DQA1Q5Y7H0 255 aa6.63□□□□□ -1.35
VPS35-204ENST00000563884 CCDC81Q6ZN84 652 aa6.63□□□□□ -1.35
VPS35-204ENST00000563884 MYPNQ86TC9 1320 aa6.63□□□□□ -1.35
VPS35-204ENST00000563884 TMEM52Q8NDY8 209 aa6.63□□□□□ -1.35
VPS35-204ENST00000563884 CXorf38Q8TB03 319 aa6.63□□□□□ -1.35
VPS35-204ENST00000563884 MYO3BQ8WXR4 1341 aa6.63□□□□□ -1.35
VPS35-204ENST00000563884 TESK2Q96S53 571 aa6.63□□□□□ -1.35
VPS35-204ENST00000563884 SRRTQ9BXP5 876 aaKnown RBP6.63□□□□□ -1.35
VPS35-204ENST00000563884 KRTAP4-5Q9BYR2 181 aa6.63□□□□□ -1.35
VPS35-204ENST00000563884 PCDHA5Q9Y5H7 936 aa6.63□□□□□ -1.35
VPS35-204ENST00000563884 MYO9BQ13459 2157 aa6.62□□□□□ -1.35
VPS35-204ENST00000563884 ARAP2Q8WZ64 1704 aa6.62□□□□□ -1.35
VPS35-204ENST00000563884 MAP3K15Q6ZN16 1313 aa6.62□□□□□ -1.35
VPS35-204ENST00000563884 A0A1W2PQJ5 194 aa6.62□□□□□ -1.35
VPS35-204ENST00000563884 TLR2O60603 784 aa6.62□□□□□ -1.35
VPS35-204ENST00000563884 NTSR2O95665 410 aa6.62□□□□□ -1.35
VPS35-204ENST00000563884 SNRPA1P09661 255 aaKnown RBP6.62□□□□□ -1.35
VPS35-204ENST00000563884 NASPP49321 788 aaPredicted RBP6.62□□□□□ -1.35
VPS35-204ENST00000563884 MRPS5P82675 430 aaKnown RBP6.62□□□□□ -1.35
VPS35-204ENST00000563884 NR1I3Q14994 352 aa6.62□□□□□ -1.35
VPS35-204ENST00000563884 SUPT20HL1Q3ZLR7 823 aa6.62□□□□□ -1.35
VPS35-204ENST00000563884 PLEKHN1Q494U1 663 aaPredicted RBP6.62□□□□□ -1.35
VPS35-204ENST00000563884 AXDND1Q5T1B0 1012 aaPredicted RBP6.62□□□□□ -1.35
VPS35-204ENST00000563884 PRAMEF18Q5VWM3 479 aa6.62□□□□□ -1.35
VPS35-204ENST00000563884 ERICH6BQ5W0A0 696 aa6.62□□□□□ -1.35
VPS35-204ENST00000563884 ZC3H14Q6PJT7 736 aaKnown RBP6.62□□□□□ -1.35
VPS35-204ENST00000563884 ANKRD13AQ8IZ07 590 aa6.62□□□□□ -1.35
VPS35-204ENST00000563884 ZNF428Q96B54 188 aa6.62□□□□□ -1.35
VPS35-204ENST00000563884 PAWRQ96IZ0 340 aaKnown RBP6.62□□□□□ -1.35
VPS35-204ENST00000563884 ASB2Q96Q27 587 aa6.62□□□□□ -1.35
VPS35-204ENST00000563884 CRBNQ96SW2 442 aa6.62□□□□□ -1.35
VPS35-204ENST00000563884 LBHD1Q9BQE6 289 aaPredicted RBP6.62□□□□□ -1.35
VPS35-204ENST00000563884 AK9Q5TCS8 1911 aa6.62□□□□□ -1.35
VPS35-204ENST00000563884 FRMPD3Q5JV73 1810 aa6.62□□□□□ -1.35
VPS35-204ENST00000563884 CCL15-CCL14A0A0B4J2E2 113 aa6.61□□□□□ -1.35
VPS35-204ENST00000563884 A0A1W2PQH9 124 aa6.61□□□□□ -1.35
VPS35-204ENST00000563884 H0Y8X5 98 aa6.61□□□□□ -1.35
VPS35-204ENST00000563884 TCF3P15923 654 aa6.61□□□□□ -1.35
VPS35-204ENST00000563884 PSMC4P43686 418 aa6.61□□□□□ -1.35
VPS35-204ENST00000563884 CASP7P55210 303 aa6.61□□□□□ -1.35
VPS35-204ENST00000563884 MVKQ03426 396 aa6.61□□□□□ -1.35
VPS35-204ENST00000563884 HLFQ16534 295 aa6.61□□□□□ -1.35
VPS35-204ENST00000563884 CCL15Q16663 113 aa6.61□□□□□ -1.35
VPS35-204ENST00000563884 SYT8Q8NBV8 401 aa6.61□□□□□ -1.35
VPS35-204ENST00000563884 PTPN18Q99952 460 aa6.61□□□□□ -1.35
VPS35-204ENST00000563884 LRFN3Q9BTN0 628 aa6.61□□□□□ -1.35
VPS35-204ENST00000563884 SLC12A9Q9BXP2 914 aa6.61□□□□□ -1.35
VPS35-204ENST00000563884 CCSER2Q9H7U1 834 aa6.61□□□□□ -1.35
VPS35-204ENST00000563884 IGSF5Q9NSI5 407 aa6.61□□□□□ -1.35
VPS35-204ENST00000563884 STRIP2Q9ULQ0 834 aa6.61□□□□□ -1.35
VPS35-204ENST00000563884 INPP5FQ9Y2H2 1132 aa6.61□□□□□ -1.35
VPS35-204ENST00000563884 SLC12A7Q9Y666 1083 aa6.61□□□□□ -1.35
VPS35-204ENST00000563884 PKD1L2Q7Z442 2459 aa6.6□□□□□ -1.35
VPS35-204ENST00000563884 CACNA1BQ00975 2339 aa6.6□□□□□ -1.35
VPS35-204ENST00000563884 UBN2Q6ZU65 1347 aa6.6□□□□□ -1.35
VPS35-204ENST00000563884 MSL3P1P0C860 447 aa6.6□□□□□ -1.35
VPS35-204ENST00000563884 PFKLP17858 780 aa6.6□□□□□ -1.35
VPS35-204ENST00000563884 ATF4P18848 351 aaPredicted RBP6.6□□□□□ -1.35
VPS35-204ENST00000563884 GPTP24298 496 aa6.6□□□□□ -1.35
VPS35-204ENST00000563884 PIP4K2AP48426 406 aaPredicted RBP6.6□□□□□ -1.35
VPS35-204ENST00000563884 MAPKAPK2P49137 400 aa6.6□□□□□ -1.35
VPS35-204ENST00000563884 SMAD3P84022 425 aaKnown RBP6.6□□□□□ -1.35
VPS35-204ENST00000563884 ZNF200P98182 395 aaPredicted RBP6.6□□□□□ -1.35
VPS35-204ENST00000563884 SLC10A5Q5PT55 438 aa6.6□□□□□ -1.35
VPS35-204ENST00000563884 SUSD4Q5VX71 490 aa6.6□□□□□ -1.35
VPS35-204ENST00000563884 DCAF15Q66K64 600 aa6.6□□□□□ -1.35
VPS35-204ENST00000563884 LINC01356Q8N9X3 169 aa6.6□□□□□ -1.35
VPS35-204ENST00000563884 BRF1Q92994 677 aa6.6□□□□□ -1.35
VPS35-204ENST00000563884 CLMNQ96JQ2 1002 aa6.6□□□□□ -1.35
VPS35-204ENST00000563884 DEFB118Q96PH6 123 aa6.6□□□□□ -1.35
VPS35-204ENST00000563884 UTP14AQ9BVJ6 771 aaKnown RBP6.6□□□□□ -1.35
VPS35-204ENST00000563884 ARHGAP39Q9C0H5 1083 aa6.6□□□□□ -1.35
VPS35-204ENST00000563884 PHAXQ9H814 394 aaKnown RBP6.6□□□□□ -1.35
VPS35-204ENST00000563884 LUC7LQ9NQ29 371 aaKnown RBP6.6□□□□□ -1.35
VPS35-204ENST00000563884 ADAMTS20P59510 1910 aa6.59□□□□□ -1.35
VPS35-204ENST00000563884 WNT10BO00744 389 aa6.59□□□□□ -1.35
VPS35-204ENST00000563884 TP53P04637 393 aaPredicted RBP6.59□□□□□ -1.35
VPS35-204ENST00000563884 CELA3BP08861 270 aa6.59□□□□□ -1.35
VPS35-204ENST00000563884 CETPP11597 493 aa6.59□□□□□ -1.35
VPS35-204ENST00000563884 CD247P20963 164 aa6.59□□□□□ -1.35
VPS35-204ENST00000563884 NOP2P46087 812 aaKnown RBP6.59□□□□□ -1.35
VPS35-204ENST00000563884 LIMS1P48059 325 aa6.59□□□□□ -1.35
VPS35-204ENST00000563884 ZNF445P59923 1031 aa6.59□□□□□ -1.35
VPS35-204ENST00000563884 AAK1Q2M2I8 961 aa6.59□□□□□ -1.35
VPS35-204ENST00000563884 BICRALQ6AI39 1079 aa6.59□□□□□ -1.35
VPS35-204ENST00000563884 CYP2R1Q6VVX0 501 aa6.59□□□□□ -1.35
VPS35-204ENST00000563884 OPTNQ96CV9 577 aa6.59□□□□□ -1.35
VPS35-204ENST00000563884 KCNH6Q9H252 994 aa6.59□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms