RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 GPR182O15218 404 aa15.32■□□□□ 0.04
SHMT2-219ENST00000555563 EIF4BP23588 611 aaKnown RBP15.32■□□□□ 0.04
SHMT2-219ENST00000555563 DNM2P50570 870 aa15.32■□□□□ 0.04
SHMT2-219ENST00000555563 FXR2P51116 673 aaKnown RBP eCLIP15.32■□□□□ 0.04
SHMT2-219ENST00000555563 ADGRE1Q14246 886 aa15.32■□□□□ 0.04
SHMT2-219ENST00000555563 ODR4Q5SWX8 454 aa15.32■□□□□ 0.04
SHMT2-219ENST00000555563 CATSPER3Q86XQ3 398 aa15.32■□□□□ 0.04
SHMT2-219ENST00000555563 RHPN2Q8IUC4 686 aa15.32■□□□□ 0.04
SHMT2-219ENST00000555563 MAFAQ8NHW3 353 aaPredicted RBP15.32■□□□□ 0.04
SHMT2-219ENST00000555563 ERMNQ8TAM6 284 aa15.32■□□□□ 0.04
SHMT2-219ENST00000555563 PIGOQ8TEQ8 1089 aa15.32■□□□□ 0.04
SHMT2-219ENST00000555563 ARNTL2Q8WYA1 636 aa15.32■□□□□ 0.04
SHMT2-219ENST00000555563 NLRP4Q96MN2 994 aa15.32■□□□□ 0.04
SHMT2-219ENST00000555563 ANKEF1Q9NU02 776 aa15.32■□□□□ 0.04
SHMT2-219ENST00000555563 FOXD4L1Q9NU39 408 aa15.32■□□□□ 0.04
SHMT2-219ENST00000555563 TTC3P53804 2025 aa15.32■□□□□ 0.04
SHMT2-219ENST00000555563 A0A087WWV3 80 aa15.31■□□□□ 0.04
SHMT2-219ENST00000555563 GAS2O43903 313 aaKnown RBP15.31■□□□□ 0.04
SHMT2-219ENST00000555563 PDCP20941 246 aa15.31■□□□□ 0.04
SHMT2-219ENST00000555563 RARRES1P49788 294 aa15.31■□□□□ 0.04
SHMT2-219ENST00000555563 POTEGQ6S5H5 508 aa15.31■□□□□ 0.04
SHMT2-219ENST00000555563 NPAS4Q8IUM7 802 aa15.31■□□□□ 0.04
SHMT2-219ENST00000555563 KSR1Q8IVT5 923 aa15.31■□□□□ 0.04
SHMT2-219ENST00000555563 SNX21Q969T3 373 aa15.31■□□□□ 0.04
SHMT2-219ENST00000555563 TMEM143Q96AN5 459 aa15.31■□□□□ 0.04
SHMT2-219ENST00000555563 INTS4Q96HW7 963 aaKnown RBP15.31■□□□□ 0.04
SHMT2-219ENST00000555563 CCDC43Q96MW1 224 aaKnown RBP15.31■□□□□ 0.04
SHMT2-219ENST00000555563 GAS2L1Q99501 681 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-219ENST00000555563 ADAM2Q99965 735 aa15.31■□□□□ 0.04
SHMT2-219ENST00000555563 POLR3CQ9BUI4 534 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-219ENST00000555563 RC3H2Q9HBD1 1191 aaKnown RBP15.31■□□□□ 0.04
SHMT2-219ENST00000555563 XPNPEP1Q9NQW7 623 aa15.31■□□□□ 0.04
SHMT2-219ENST00000555563 MTUS1Q9ULD2 1270 aa15.31■□□□□ 0.04
SHMT2-219ENST00000555563 CUL9Q8IWT3 2517 aa15.31■□□□□ 0.04
SHMT2-219ENST00000555563 VCANP13611 3396 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 A0A087WZ62 844 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 DENND3A2RUS2 1198 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 RFXAPO00287 272 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 LAD1O00515 517 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 CSDE1O75534 798 aaKnown RBP15.3■□□□□ 0.04
SHMT2-219ENST00000555563 FGFR4P22455 802 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 RPA1P27694 616 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 PRPHP41219 470 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 ATP2C1P98194 919 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-219ENST00000555563 DSC3Q14574 896 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 IL17AQ16552 155 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 HAUS3Q68CZ6 603 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 BRAPQ7Z569 592 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 FERMT3Q86UX7 667 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 ZNF410Q86VK4 478 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 ADGRA3Q8IWK6 1321 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 EXOC8Q8IYI6 725 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 CRIPAKQ8N1N5 446 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 IGSF22Q8N9C0 903 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 PSPC1Q8WXF1 523 aaKnown RBP15.3■□□□□ 0.04
SHMT2-219ENST00000555563 TGS1Q96RS0 853 aaKnown RBP15.3■□□□□ 0.04
SHMT2-219ENST00000555563 MTRQ99707 1265 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 FDXACB1Q9BRP7 624 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-219ENST00000555563 GCOM2Q9BZD3 368 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-219ENST00000555563 ATP6V0A4Q9HBG4 840 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 C1orf112Q9NSG2 853 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 COL4A3BPQ9Y5P4 624 aa15.3■□□□□ 0.04
SHMT2-219ENST00000555563 NLRC5Q86WI3 1866 aa15.29■□□□□ 0.04
SHMT2-219ENST00000555563 PP2D1A8MPX8 630 aa15.29■□□□□ 0.04
SHMT2-219ENST00000555563 C9IYK1 514 aa15.29■□□□□ 0.04
SHMT2-219ENST00000555563 USO1O60763 962 aaKnown RBP15.29■□□□□ 0.04
SHMT2-219ENST00000555563 DGAT1O75907 488 aa15.29■□□□□ 0.04
SHMT2-219ENST00000555563 DGKIO75912 1065 aa15.29■□□□□ 0.04
SHMT2-219ENST00000555563 SYT1P21579 422 aa15.29■□□□□ 0.04
SHMT2-219ENST00000555563 IBSPP21815 317 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-219ENST00000555563 CCT6AP40227 531 aaKnown RBP15.29■□□□□ 0.04
SHMT2-219ENST00000555563 SARSP49591 514 aaKnown RBP15.29■□□□□ 0.04
SHMT2-219ENST00000555563 ERVK-21P61565 698 aa15.29■□□□□ 0.04
SHMT2-219ENST00000555563 CDC42EP1Q00587 391 aa15.29■□□□□ 0.04
SHMT2-219ENST00000555563 FAM43BQ6ZT52 329 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-219ENST00000555563 HSCBQ8IWL3 235 aa15.29■□□□□ 0.04
SHMT2-219ENST00000555563 TCP11Q8WWU5 503 aa15.29■□□□□ 0.04
SHMT2-219ENST00000555563 C17orf80Q9BSJ5 609 aa15.29■□□□□ 0.04
SHMT2-219ENST00000555563 RAB34Q9BZG1 259 aa15.29■□□□□ 0.04
SHMT2-219ENST00000555563 RGS18Q9NS28 235 aa15.29■□□□□ 0.04
SHMT2-219ENST00000555563 LRWD1Q9UFC0 647 aa15.29■□□□□ 0.04
SHMT2-219ENST00000555563 RALGAPA2Q2PPJ7 1873 aa15.29■□□□□ 0.04
SHMT2-219ENST00000555563 PRUNE2Q8WUY3 3088 aa15.28■□□□□ 0.04
SHMT2-219ENST00000555563 STAG3L1P0CL83 205 aa15.28■□□□□ 0.04
SHMT2-219ENST00000555563 IGFBP4P22692 258 aa15.28■□□□□ 0.04
SHMT2-219ENST00000555563 LAMTOR4Q0VGL1 99 aa15.28■□□□□ 0.04
SHMT2-219ENST00000555563 ECM1Q16610 540 aa15.28■□□□□ 0.04
SHMT2-219ENST00000555563 DTHD1Q6ZMT9 781 aa15.28■□□□□ 0.04
SHMT2-219ENST00000555563 SLC24A5Q71RS6 500 aa15.28■□□□□ 0.04
SHMT2-219ENST00000555563 SNX29Q8TEQ0 813 aa15.28■□□□□ 0.04
SHMT2-219ENST00000555563 GDPD5Q8WTR4 605 aa15.28■□□□□ 0.04
SHMT2-219ENST00000555563 PRPF31Q8WWY3 499 aaKnown RBP15.28■□□□□ 0.04
SHMT2-219ENST00000555563 ZNF689Q96CS4 500 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-219ENST00000555563 NACC1Q96RE7 527 aa15.28■□□□□ 0.04
SHMT2-219ENST00000555563 IFT122Q9HBG6 1241 aa15.28■□□□□ 0.04
SHMT2-219ENST00000555563 DBR1Q9UK59 544 aaKnown RBP15.28■□□□□ 0.04
SHMT2-219ENST00000555563 LRFN2Q9ULH4 789 aa15.28■□□□□ 0.04
SHMT2-219ENST00000555563 KIAA1671Q9BY89 1806 aa15.27■□□□□ 0.04
SHMT2-219ENST00000555563 LINC00271P0C7V0 271 aa15.27■□□□□ 0.04
SHMT2-219ENST00000555563 SRGAP2CP0DJJ0 459 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms