RNA–Protein interactions for RNA: ENST00000553989.1

TDP1-208, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 728 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-208ENST00000553989 CLK2P49760 499 aaKnown RBP9.99□□□□□ -0.81
TDP1-208ENST00000553989 CLCN3P51790 818 aa9.99□□□□□ -0.81
TDP1-208ENST00000553989 CRYBB1P53674 252 aaPredicted RBP9.99□□□□□ -0.81
TDP1-208ENST00000553989 AKAP17AQ02040 695 aaKnown RBP9.99□□□□□ -0.81
TDP1-208ENST00000553989 KRT32Q14532 448 aa9.99□□□□□ -0.81
TDP1-208ENST00000553989 PRR16Q569H4 304 aa9.99□□□□□ -0.81
TDP1-208ENST00000553989 LLGL2Q6P1M3 1020 aa9.99□□□□□ -0.81
TDP1-208ENST00000553989 FAM43BQ6ZT52 329 aaPredicted RBP9.99□□□□□ -0.81
TDP1-208ENST00000553989 FAM228AQ86W67 206 aa9.99□□□□□ -0.81
TDP1-208ENST00000553989 SMAP1Q8IYB5 467 aaPredicted RBP9.99□□□□□ -0.81
TDP1-208ENST00000553989 REXO1Q8N1G1 1221 aaKnown RBP9.99□□□□□ -0.81
TDP1-208ENST00000553989 CDCA3Q99618 268 aaPredicted RBP9.99□□□□□ -0.81
TDP1-208ENST00000553989 APOL5Q9BWW9 433 aa9.99□□□□□ -0.81
TDP1-208ENST00000553989 PHF7Q9BWX1 381 aaPredicted RBP9.99□□□□□ -0.81
TDP1-208ENST00000553989 C6orf50Q9HD87 102 aa9.99□□□□□ -0.81
TDP1-208ENST00000553989 TBC1D22BQ9NU19 505 aa9.99□□□□□ -0.81
TDP1-208ENST00000553989 TMEM161AQ9NX61 479 aa9.99□□□□□ -0.81
TDP1-208ENST00000553989 GABBR1Q9UBS5 961 aa9.99□□□□□ -0.81
TDP1-208ENST00000553989 PUF60Q9UHX1 559 aaKnown RBP9.99□□□□□ -0.81
TDP1-208ENST00000553989 LOXHD1Q8IVV2 1947 aa9.99□□□□□ -0.81
TDP1-208ENST00000553989 C9IYK1 514 aa9.98□□□□□ -0.81
TDP1-208ENST00000553989 HMGB1P09429 215 aaKnown RBP9.98□□□□□ -0.81
TDP1-208ENST00000553989 SP100P23497 879 aaPredicted RBP9.98□□□□□ -0.81
TDP1-208ENST00000553989 GNA11P29992 359 aa9.98□□□□□ -0.81
TDP1-208ENST00000553989 CDC27P30260 824 aa9.98□□□□□ -0.81
TDP1-208ENST00000553989 TIE1P35590 1138 aa9.98□□□□□ -0.81
TDP1-208ENST00000553989 TECP42680 631 aa9.98□□□□□ -0.81
TDP1-208ENST00000553989 ERVFC1P60507 584 aa9.98□□□□□ -0.81
TDP1-208ENST00000553989 RBM10P98175 930 aaKnown RBP9.98□□□□□ -0.81
TDP1-208ENST00000553989 EXOSC10Q01780 885 aaKnown RBP9.98□□□□□ -0.81
TDP1-208ENST00000553989 APOBRQ0VD83 1088 aa9.98□□□□□ -0.81
TDP1-208ENST00000553989 FUT2Q10981 343 aa9.98□□□□□ -0.81
TDP1-208ENST00000553989 DUSP6Q16828 381 aa9.98□□□□□ -0.81
TDP1-208ENST00000553989 PFKFB3Q16875 520 aaPredicted RBP9.98□□□□□ -0.81
TDP1-208ENST00000553989 SKOR2Q2VWA4 1001 aaPredicted RBP9.98□□□□□ -0.81
TDP1-208ENST00000553989 ADCK5Q3MIX3 580 aa9.98□□□□□ -0.81
TDP1-208ENST00000553989 PDE12Q6L8Q7 609 aaKnown RBP9.98□□□□□ -0.81
TDP1-208ENST00000553989 ZNF746Q6NUN9 644 aaPredicted RBP9.98□□□□□ -0.81
TDP1-208ENST00000553989 TRIM67Q6ZTA4 783 aa9.98□□□□□ -0.81
TDP1-208ENST00000553989 LRRC43Q8N309 656 aa9.98□□□□□ -0.81
TDP1-208ENST00000553989 ZNF668Q96K58 619 aaPredicted RBP9.98□□□□□ -0.81
TDP1-208ENST00000553989 FAM167AQ96KS9 214 aa9.98□□□□□ -0.81
TDP1-208ENST00000553989 TCF25Q9BQ70 676 aa9.98□□□□□ -0.81
TDP1-208ENST00000553989 TMEM117Q9H0C3 514 aa9.98□□□□□ -0.81
TDP1-208ENST00000553989 PCDHA10Q9Y5I2 948 aa9.98□□□□□ -0.81
TDP1-208ENST00000553989 PLXNA4Q9HCM2 1894 aa9.98□□□□□ -0.81
TDP1-208ENST00000553989 IGLV3-22A0A075B6J6 115 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 WDR64B1ANS9 1081 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 ZBTB42B2RXF5 422 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 LOC730098B7Z3J9 87 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 MAGEB2O15479 319 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 DHX15O43143 795 aaKnown RBP9.97□□□□□ -0.81
TDP1-208ENST00000553989 CHMP2AO43633 222 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 CYP3A4P08684 503 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 ATP4AP20648 1035 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 MCM4P33991 863 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 ADD1P35611 737 aaKnown RBP9.97□□□□□ -0.81
TDP1-208ENST00000553989 PPM1AP35813 382 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 PBX3P40426 434 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 NLRP11P59045 1033 aaKnown RBP9.97□□□□□ -0.81
TDP1-208ENST00000553989 ZXDAP98168 799 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 KRT17Q04695 432 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 CBX2Q14781 532 aaPredicted RBP9.97□□□□□ -0.81
TDP1-208ENST00000553989 MCTP2Q6DN12 878 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 EFCAB12Q6NXP0 572 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 TMC7Q7Z402 723 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 LRRC71Q8N4P6 559 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 TMEM87AQ8NBN3 555 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 BICD2Q8TD16 824 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 RASGRP4Q8TDF6 673 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 NLRP7Q8WX94 980 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 MRPS27Q92552 414 aaKnown RBP9.97□□□□□ -0.81
TDP1-208ENST00000553989 ZNF558Q96NG5 402 aa9.97□□□□□ -0.81
TDP1-208ENST00000553989 ELAC1Q9H777 363 aaKnown RBP9.97□□□□□ -0.81
TDP1-208ENST00000553989 MAFBQ9Y5Q3 323 aaPredicted RBP9.97□□□□□ -0.81
TDP1-208ENST00000553989 FNDC1Q4ZHG4 1894 aaPredicted RBP9.96□□□□□ -0.81
TDP1-208ENST00000553989 ESYT2A0FGR8 921 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 DDX11L8A8MPP1 907 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 FSCN2O14926 492 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 GAS7O60861 476 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 GPR32O75388 356 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 CDC45O75419 566 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 OATP04181 439 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 CPA1P15085 419 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 ATF7P17544 494 aaPredicted RBP9.96□□□□□ -0.82
TDP1-208ENST00000553989 RCAN1P53805 252 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 PTPN5P54829 565 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 SIGLEC14Q08ET2 396 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 TBC1D8BQ0IIM8 1120 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 BMS1Q14692 1282 aaKnown RBP9.96□□□□□ -0.82
TDP1-208ENST00000553989 PKN1Q16512 942 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 ANKRD54Q6NXT1 300 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 KCNT2Q6UVM3 1135 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 Q6ZUG5 572 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 CCDC148Q8NFR7 591 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 VN1R2Q8NFZ6 395 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 BRF1Q92994 677 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 JAKMIP1Q96N16 626 aaKnown RBP9.96□□□□□ -0.82
TDP1-208ENST00000553989 ZMYND12Q9H0C1 365 aa9.96□□□□□ -0.82
TDP1-208ENST00000553989 CWH43Q9H720 699 aa9.96□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms