RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 GPAT2Q6NUI2 795 aa28.85■■■□□ 2.21
CCDC88C-205ENST00000553403 HVCN1Q96D96 273 aa28.85■■■□□ 2.21
CCDC88C-205ENST00000553403 CRACR2AQ9BSW2 395 aa28.85■■■□□ 2.21
CCDC88C-205ENST00000553403 IKZF4Q9H2S9 585 aa28.85■■■□□ 2.21
CCDC88C-205ENST00000553403 C17orf75Q9HAS0 396 aa28.85■■■□□ 2.21
CCDC88C-205ENST00000553403 ARHGAP20Q9P2F6 1191 aa28.85■■■□□ 2.21
CCDC88C-205ENST00000553403 IGSF9BQ9UPX0 1349 aa28.84■■■□□ 2.21
CCDC88C-205ENST00000553403 POLR2FP61218 127 aaKnown RBP28.84■■■□□ 2.21
CCDC88C-205ENST00000553403 DCAF17Q5H9S7 520 aaPredicted RBP28.84■■■□□ 2.21
CCDC88C-205ENST00000553403 FAM102BQ5T8I3 360 aa28.84■■■□□ 2.21
CCDC88C-205ENST00000553403 HAUS6Q7Z4H7 955 aa28.84■■■□□ 2.21
CCDC88C-205ENST00000553403 KIFAP3Q92845 792 aa28.84■■■□□ 2.21
CCDC88C-205ENST00000553403 CEP170P1Q96L14 293 aa28.84■■■□□ 2.21
CCDC88C-205ENST00000553403 RBPJLQ9UBG7 517 aa28.84■■■□□ 2.21
CCDC88C-205ENST00000553403 ZNF215Q9UL58 517 aaPredicted RBP28.84■■■□□ 2.21
CCDC88C-205ENST00000553403 WDR81Q562E7 1941 aa28.84■■■□□ 2.21
CCDC88C-205ENST00000553403 SSU72P8A0A1W2PR75 194 aa28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 SP2Q02086 613 aa28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 MAPK8IP2Q13387 824 aaPredicted RBP28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 SNAPC2Q13487 334 aa28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 PPP2R5AQ15172 486 aa28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 EXOC3L4Q17RC7 722 aa28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 SFMBT2Q5VUG0 894 aa28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 TCERG1LQ5VWI1 586 aa28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 GBP6Q6ZN66 633 aa28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 CCDC60Q8IWA6 550 aaPredicted RBP28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 TSC1Q92574 1164 aa28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 IRX2Q9BZI1 471 aaPredicted RBP28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 LCA5LO95447 670 aa28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 PEX3P56589 373 aa28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 XKR3Q5GH77 459 aa28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 ZNF569Q5MCW4 686 aa28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 DPY19L2P1Q6NXN4 242 aa28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 SPIRE2Q8WWL2 714 aa28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 MPHOSPH6Q99547 160 aaKnown RBP28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 SH2D3AQ9BRG2 576 aa28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 NLRC4Q9NPP4 1024 aa28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 GPRC5CQ9NQ84 441 aa28.83■■■□□ 2.21
CCDC88C-205ENST00000553403 DGAT1O75907 488 aa28.82■■■□□ 2.2
CCDC88C-205ENST00000553403 CYP2J2P51589 502 aa28.82■■■□□ 2.2
CCDC88C-205ENST00000553403 SMTNP53814 917 aa28.82■■■□□ 2.2
CCDC88C-205ENST00000553403 PRKCEQ02156 737 aa28.82■■■□□ 2.2
CCDC88C-205ENST00000553403 SPA17Q15506 151 aa28.82■■■□□ 2.2
CCDC88C-205ENST00000553403 SEPT14Q6ZU15 432 aa28.82■■■□□ 2.2
CCDC88C-205ENST00000553403 KIAA1328Q86T90 577 aa28.82■■■□□ 2.2
CCDC88C-205ENST00000553403 MCPH1Q8NEM0 835 aa28.82■■■□□ 2.2
CCDC88C-205ENST00000553403 PDLIM7Q9NR12 457 aa28.82■■■□□ 2.2
CCDC88C-205ENST00000553403 FBXL5Q9UKA1 691 aa28.82■■■□□ 2.2
CCDC88C-205ENST00000553403 PON1P27169 355 aa28.81■■■□□ 2.2
CCDC88C-205ENST00000553403 GJA5P36382 358 aa28.81■■■□□ 2.2
CCDC88C-205ENST00000553403 EIF4A3P38919 411 aaKnown RBP28.81■■■□□ 2.2
CCDC88C-205ENST00000553403 RTP1P59025 263 aa28.81■■■□□ 2.2
CCDC88C-205ENST00000553403 CYFIP1Q7L576 1253 aa28.81■■■□□ 2.2
CCDC88C-205ENST00000553403 SLC10A4Q96EP9 437 aa28.81■■■□□ 2.2
CCDC88C-205ENST00000553403 TXNRD2Q9NNW7 524 aa28.81■■■□□ 2.2
CCDC88C-205ENST00000553403 MYO6Q9UM54 1294 aa28.81■■■□□ 2.2
CCDC88C-205ENST00000553403 EXOC7Q9UPT5 735 aa28.81■■■□□ 2.2
CCDC88C-205ENST00000553403 TELO2Q9Y4R8 837 aa28.81■■■□□ 2.2
CCDC88C-205ENST00000553403 SERPING1P05155 500 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 TGFB3P10600 412 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 SP4Q02446 784 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 TUBB2AQ13885 445 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 KLHDC7AQ5VTJ3 777 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 DNAJC5GQ8N7S2 189 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 GTF3C2Q8WUA4 911 aaPredicted RBP28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 JAKMIP2Q96AA8 810 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 NTPCRQ9BSD7 190 aaKnown RBP28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 TUBB2BQ9BVA1 445 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 CYP26B1Q9NR63 512 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 AIPL1Q9NZN9 384 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 MAFBQ9Y5Q3 323 aaPredicted RBP28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 SYNGAP1Q96PV0 1343 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 ARID2Q68CP9 1835 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 SLC16A4O15374 487 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 KRT86O43790 486 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 EXOC3O60645 756 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 PLEKP08567 350 aaPredicted RBP28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 KIF11P52732 1056 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 VAV2P52735 878 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 DMP1Q13316 513 aaPredicted RBP28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 SLC9C1Q4G0N8 1177 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 HGSNATQ68CP4 663 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 SLC35F6Q8N357 371 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 TSGA10Q9BZW7 698 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 DEF6Q9H4E7 631 aa28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 SEPT9Q9UHD8 586 aaPredicted RBP28.8■■■□□ 2.2
CCDC88C-205ENST00000553403 DOCK5Q9H7D0 1870 aa28.79■■■□□ 2.2
CCDC88C-205ENST00000553403 IGKV6D-21A0A0A0MT36 114 aa28.79■■■□□ 2.2
CCDC88C-205ENST00000553403 MAPK13O15264 365 aa28.79■■■□□ 2.2
CCDC88C-205ENST00000553403 ABL1P00519 1130 aa28.79■■■□□ 2.2
CCDC88C-205ENST00000553403 SLC9A1P19634 815 aa28.79■■■□□ 2.2
CCDC88C-205ENST00000553403 NEDD9Q14511 834 aa28.79■■■□□ 2.2
CCDC88C-205ENST00000553403 ASTE1Q2TB18 679 aaPredicted RBP28.79■■■□□ 2.2
CCDC88C-205ENST00000553403 TRMT1LQ7Z2T5 733 aaKnown RBP28.79■■■□□ 2.2
CCDC88C-205ENST00000553403 EHBP1Q8NDI1 1231 aa28.79■■■□□ 2.2
CCDC88C-205ENST00000553403 ANKRD7Q92527 254 aa28.79■■■□□ 2.2
CCDC88C-205ENST00000553403 MROH8Q9H579 483 aa28.79■■■□□ 2.2
CCDC88C-205ENST00000553403 ZNF302Q9NR11 478 aa28.79■■■□□ 2.2
CCDC88C-205ENST00000553403 MRFAP1Q9Y605 127 aa28.79■■■□□ 2.2
CCDC88C-205ENST00000553403 UBA1P22314 1058 aaKnown RBP28.78■■■□□ 2.2
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms