RNA–Protein interactions for RNA: ENST00000544622.4

YBX3-216, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 685 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-216ENST00000544622 JPH2Q9BR39 696 aaPredicted RBP12.78□□□□□ -0.36
YBX3-216ENST00000544622 CERS4Q9HA82 394 aa12.78□□□□□ -0.36
YBX3-216ENST00000544622 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.78□□□□□ -0.36
YBX3-216ENST00000544622 SMC3Q9UQE7 1217 aa12.78□□□□□ -0.36
YBX3-216ENST00000544622 C9IYK1 514 aa12.77□□□□□ -0.37
YBX3-216ENST00000544622 MED24O75448 989 aa12.77□□□□□ -0.37
YBX3-216ENST00000544622 RPA1P27694 616 aa12.77□□□□□ -0.37
YBX3-216ENST00000544622 RFC5P40937 340 aa12.77□□□□□ -0.37
YBX3-216ENST00000544622 RARRES1P49788 294 aa12.77□□□□□ -0.37
YBX3-216ENST00000544622 DNM2P50570 870 aa12.77□□□□□ -0.37
YBX3-216ENST00000544622 PTGDRQ13258 359 aa12.77□□□□□ -0.37
YBX3-216ENST00000544622 GNL2Q13823 731 aaKnown RBP12.77□□□□□ -0.37
YBX3-216ENST00000544622 RILPL1Q5EBL4 403 aa12.77□□□□□ -0.37
YBX3-216ENST00000544622 LARP1BQ659C4 914 aaKnown RBP12.77□□□□□ -0.37
YBX3-216ENST00000544622 SLC24A5Q71RS6 500 aa12.77□□□□□ -0.37
YBX3-216ENST00000544622 ZNF410Q86VK4 478 aa12.77□□□□□ -0.37
YBX3-216ENST00000544622 IGSF22Q8N9C0 903 aa12.77□□□□□ -0.37
YBX3-216ENST00000544622 MAFAQ8NHW3 353 aaPredicted RBP12.77□□□□□ -0.37
YBX3-216ENST00000544622 SLC7A3Q8WY07 619 aa12.77□□□□□ -0.37
YBX3-216ENST00000544622 ARNTL2Q8WYA1 636 aa12.77□□□□□ -0.37
YBX3-216ENST00000544622 CLP1Q92989 425 aaKnown RBP12.77□□□□□ -0.37
YBX3-216ENST00000544622 INTS4Q96HW7 963 aaKnown RBP12.77□□□□□ -0.37
YBX3-216ENST00000544622 TGS1Q96RS0 853 aaKnown RBP12.77□□□□□ -0.37
YBX3-216ENST00000544622 GAS2L1Q99501 681 aaPredicted RBP12.77□□□□□ -0.37
YBX3-216ENST00000544622 POLR3CQ9BUI4 534 aaPredicted RBP12.77□□□□□ -0.37
YBX3-216ENST00000544622 IFT122Q9HBG6 1241 aa12.77□□□□□ -0.37
YBX3-216ENST00000544622 XPNPEP1Q9NQW7 623 aa12.77□□□□□ -0.37
YBX3-216ENST00000544622 ANKEF1Q9NU02 776 aa12.77□□□□□ -0.37
YBX3-216ENST00000544622 SUCLA2Q9P2R7 463 aaPredicted RBP12.77□□□□□ -0.37
YBX3-216ENST00000544622 NOL7Q9UMY1 257 aaKnown RBP12.77□□□□□ -0.37
YBX3-216ENST00000544622 MTCH2Q9Y6C9 303 aa12.77□□□□□ -0.37
YBX3-216ENST00000544622 LOXHD1Q8IVV2 1947 aa12.77□□□□□ -0.37
YBX3-216ENST00000544622 MYO9BQ13459 2157 aa12.76□□□□□ -0.37
YBX3-216ENST00000544622 A0A087WZ62 844 aa12.76□□□□□ -0.37
YBX3-216ENST00000544622 LAD1O00515 517 aa12.76□□□□□ -0.37
YBX3-216ENST00000544622 GAS2O43903 313 aaKnown RBP12.76□□□□□ -0.37
YBX3-216ENST00000544622 MUTP22033 750 aa12.76□□□□□ -0.37
YBX3-216ENST00000544622 SARSP49591 514 aaKnown RBP12.76□□□□□ -0.37
YBX3-216ENST00000544622 GRB10Q13322 594 aa12.76□□□□□ -0.37
YBX3-216ENST00000544622 IL17AQ16552 155 aa12.76□□□□□ -0.37
YBX3-216ENST00000544622 NPAS4Q8IUM7 802 aa12.76□□□□□ -0.37
YBX3-216ENST00000544622 KSR1Q8IVT5 923 aa12.76□□□□□ -0.37
YBX3-216ENST00000544622 ZNF668Q96K58 619 aaPredicted RBP12.76□□□□□ -0.37
YBX3-216ENST00000544622 YME1L1Q96TA2 773 aa12.76□□□□□ -0.37
YBX3-216ENST00000544622 ADAM2Q99965 735 aa12.76□□□□□ -0.37
YBX3-216ENST00000544622 FDXACB1Q9BRP7 624 aaPredicted RBP12.76□□□□□ -0.37
YBX3-216ENST00000544622 C17orf80Q9BSJ5 609 aa12.76□□□□□ -0.37
YBX3-216ENST00000544622 TUFT1Q9NNX1 390 aa12.76□□□□□ -0.37
YBX3-216ENST00000544622 C1orf112Q9NSG2 853 aa12.76□□□□□ -0.37
YBX3-216ENST00000544622 LMCD1Q9NZU5 365 aa12.76□□□□□ -0.37
YBX3-216ENST00000544622 C5orf67F2Z3F1 127 aa12.75□□□□□ -0.37
YBX3-216ENST00000544622 ASAP2O43150 1006 aa12.75□□□□□ -0.37
YBX3-216ENST00000544622 DGAT1O75907 488 aa12.75□□□□□ -0.37
YBX3-216ENST00000544622 PRPHP41219 470 aa12.75□□□□□ -0.37
YBX3-216ENST00000544622 POLGP54098 1239 aaPredicted RBP12.75□□□□□ -0.37
YBX3-216ENST00000544622 ECM1Q16610 540 aa12.75□□□□□ -0.37
YBX3-216ENST00000544622 XKR9Q5GH70 373 aa12.75□□□□□ -0.37
YBX3-216ENST00000544622 FERMT3Q86UX7 667 aa12.75□□□□□ -0.37
YBX3-216ENST00000544622 RHPN2Q8IUC4 686 aa12.75□□□□□ -0.37
YBX3-216ENST00000544622 PIGOQ8TEQ8 1089 aa12.75□□□□□ -0.37
YBX3-216ENST00000544622 PRPF31Q8WWY3 499 aaKnown RBP12.75□□□□□ -0.37
YBX3-216ENST00000544622 NLRP7Q8WX94 980 aa12.75□□□□□ -0.37
YBX3-216ENST00000544622 SNX21Q969T3 373 aa12.75□□□□□ -0.37
YBX3-216ENST00000544622 TMEM143Q96AN5 459 aa12.75□□□□□ -0.37
YBX3-216ENST00000544622 SAMD11Q96NU1 681 aa12.75□□□□□ -0.37
YBX3-216ENST00000544622 TRAIPQ9BWF2 469 aa12.75□□□□□ -0.37
YBX3-216ENST00000544622 GCOM2Q9BZD3 368 aaPredicted RBP12.75□□□□□ -0.37
YBX3-216ENST00000544622 ELAC1Q9H777 363 aaKnown RBP12.75□□□□□ -0.37
YBX3-216ENST00000544622 DBR1Q9UK59 544 aaKnown RBP12.75□□□□□ -0.37
YBX3-216ENST00000544622 COL4A3BPQ9Y5P4 624 aa12.75□□□□□ -0.37
YBX3-216ENST00000544622 ADGRA3Q8IWK6 1321 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 A0A087WWV3 80 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 A0A0U1RQF3 1178 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 H3BQV1 296 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 K7ELQ4 463 aaPredicted RBP12.74□□□□□ -0.37
YBX3-216ENST00000544622 CSDE1O75534 798 aaKnown RBP12.74□□□□□ -0.37
YBX3-216ENST00000544622 STAG3L1P0CL83 205 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 FGFR4P22455 802 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 IGFBP4P22692 258 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 ARL2P36404 184 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 ATP2C1P98194 919 aaPredicted RBP12.74□□□□□ -0.37
YBX3-216ENST00000544622 POU5F1BQ06416 359 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 LAMTOR4Q0VGL1 99 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 EMC2Q15006 297 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 EPC2Q52LR7 807 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 MCTP1Q6DN14 999 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 ZNF598Q86UK7 904 aaKnown RBP12.74□□□□□ -0.37
YBX3-216ENST00000544622 FIBCD1Q8N539 461 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 TCP11Q8WWU5 503 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 PSPC1Q8WXF1 523 aaKnown RBP12.74□□□□□ -0.37
YBX3-216ENST00000544622 NACC1Q96RE7 527 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 MTRQ99707 1265 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 INO80BQ9C086 356 aaPredicted RBP12.74□□□□□ -0.37
YBX3-216ENST00000544622 CHST12Q9NRB3 414 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 TMEM161AQ9NX61 479 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 LRWD1Q9UFC0 647 aa12.74□□□□□ -0.37
YBX3-216ENST00000544622 DENND3A2RUS2 1198 aa12.73□□□□□ -0.37
YBX3-216ENST00000544622 H3BNC9 293 aa12.73□□□□□ -0.37
YBX3-216ENST00000544622 BMPR1AP36894 532 aa12.73□□□□□ -0.37
YBX3-216ENST00000544622 FAM102BQ5T8I3 360 aa12.73□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms