RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-231	ENST00000531110	AJUBA	Q96IF1	538 aa		6.69	□□□□□ -1.34
CD44-231	ENST00000531110	MAML3	Q96JK9	1138 aa		6.69	□□□□□ -1.34
CD44-231	ENST00000531110	TIGD1	Q96MW7	591 aa		6.69	□□□□□ -1.34
CD44-231	ENST00000531110	TTC1	Q99614	292 aa		6.69	□□□□□ -1.34
CD44-231	ENST00000531110	SPATA25	Q9BR10	227 aa		6.69	□□□□□ -1.34
CD44-231	ENST00000531110	TACO1	Q9BSH4	297 aa	Known RBP	6.69	□□□□□ -1.34
CD44-231	ENST00000531110	IFT22	Q9H7X7	185 aa		6.69	□□□□□ -1.34
CD44-231	ENST00000531110	BARX1	Q9HBU1	254 aa	Predicted RBP	6.69	□□□□□ -1.34
CD44-231	ENST00000531110	PARD6A	Q9NPB6	346 aa		6.69	□□□□□ -1.34
CD44-231	ENST00000531110	THG1L	Q9NWX6	298 aa	Known RBP	6.69	□□□□□ -1.34
CD44-231	ENST00000531110	ANAPC4	Q9UJX5	808 aa		6.69	□□□□□ -1.34
CD44-231	ENST00000531110	APOBEC2	Q9Y235	224 aa	Known RBP	6.69	□□□□□ -1.34
CD44-231	ENST00000531110	SBNO2	Q9Y2G9	1366 aa		6.69	□□□□□ -1.34
CD44-231	ENST00000531110	CCDC144A	A2RUR9	1427 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	UBA6	A0AVT1	1052 aa	Predicted RBP	6.68	□□□□□ -1.34
CD44-231	ENST00000531110	PRAMEF22	A3QJZ6	481 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	MROH6	A6NGR9	719 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	CTAGE5	O15320	804 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	DNAJC6	O75061	913 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	FKBP9	O95302	570 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	ZNF853	P0CG23	659 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	SLC9A1	P19634	815 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	GLRB	P48167	497 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	RIPK4	P57078	832 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	MAP3K12	Q12852	859 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	RGL3	Q3MIN7	710 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	HSP90B2P	Q58FF3	399 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	TTC38	Q5R3I4	469 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	ESRP1	Q6NXG1	681 aa	Known RBP	6.68	□□□□□ -1.34
CD44-231	ENST00000531110		Q6ZUG5	572 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	FKBP9P1	Q75LS8	142 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	PHYKPL	Q8IUZ5	450 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	ADGRG2	Q8IZP9	1017 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	ZNF610	Q8N9Z0	462 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	WDR48	Q8TAF3	677 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	USP7	Q93009	1102 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	MBD6	Q96DN6	1003 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	ZMAT4	Q9H898	229 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	UCKL1	Q9NWZ5	548 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	ADAM29	Q9UKF5	820 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	RIPOR2	Q9Y4F9	1068 aa		6.68	□□□□□ -1.34
CD44-231	ENST00000531110	TGM5	O43548	720 aa		6.67	□□□□□ -1.34
CD44-231	ENST00000531110	CYP1A1	P04798	512 aa	Predicted RBP	6.67	□□□□□ -1.34
CD44-231	ENST00000531110	BMP7	P18075	431 aa		6.67	□□□□□ -1.34
CD44-231	ENST00000531110	PTX3	P26022	381 aa	Predicted RBP	6.67	□□□□□ -1.34
CD44-231	ENST00000531110	LSP1	P33241	339 aa		6.67	□□□□□ -1.34
CD44-231	ENST00000531110	ETV4	P43268	484 aa		6.67	□□□□□ -1.34
CD44-231	ENST00000531110	IL2	P60568	153 aa		6.67	□□□□□ -1.34
CD44-231	ENST00000531110	NFATC3	Q12968	1075 aa		6.67	□□□□□ -1.34
CD44-231	ENST00000531110	TOP3A	Q13472	1001 aa	Predicted RBP	6.67	□□□□□ -1.34
CD44-231	ENST00000531110	SKOR2	Q2VWA4	1001 aa	Predicted RBP	6.67	□□□□□ -1.34
CD44-231	ENST00000531110	CT47A1	Q5JQC4	288 aa	Predicted RBP	6.67	□□□□□ -1.34
CD44-231	ENST00000531110	ZFYVE27	Q5T4F4	411 aa		6.67	□□□□□ -1.34
CD44-231	ENST00000531110	TMEM200B	Q69YZ2	307 aa		6.67	□□□□□ -1.34
CD44-231	ENST00000531110	BORA	Q6PGQ7	559 aa		6.67	□□□□□ -1.34
CD44-231	ENST00000531110	XYLT2	Q9H1B5	865 aa		6.67	□□□□□ -1.34
CD44-231	ENST00000531110	MYH16	Q9H6N6	1097 aa		6.67	□□□□□ -1.34
CD44-231	ENST00000531110	EMC7	Q9NPA0	242 aa		6.67	□□□□□ -1.34
CD44-231	ENST00000531110	TOMM22	Q9NS69	142 aa		6.67	□□□□□ -1.34
CD44-231	ENST00000531110	PAXBP1	Q9Y5B6	917 aa		6.67	□□□□□ -1.34
CD44-231	ENST00000531110	COQ9	O75208	318 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	ULK1	O75385	1050 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	PEX19	P40855	299 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	CD151	P48509	253 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	BCAR1	P56945	870 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	EIF4H	Q15056	248 aa	Known RBP	6.66	□□□□□ -1.34
CD44-231	ENST00000531110	TERF2	Q15554	542 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	WDR72	Q3MJ13	1102 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	FBLN7	Q53RD9	439 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	MCTP2	Q6DN12	878 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	KANSL1	Q7Z3B3	1105 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	PLEKHH3	Q7Z736	793 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	IFNL2	Q8IZJ0	200 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	LGI4	Q8N135	537 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	NUDT10	Q8NFP7	164 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	NUDT11	Q96G61	164 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	ZDHHC5	Q9C0B5	715 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	WNT8A	Q9H1J5	351 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	ZCCHC4	Q9H5U6	513 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	SPTLC3	Q9NUV7	552 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	H2AFY2	Q9P0M6	372 aa	Predicted RBP	6.66	□□□□□ -1.34
CD44-231	ENST00000531110	RAD54L2	Q9Y4B4	1467 aa		6.66	□□□□□ -1.34
CD44-231	ENST00000531110	CCDC196	A0A1B0GTZ2	297 aa		6.65	□□□□□ -1.34
CD44-231	ENST00000531110	EYA4	O95677	639 aa		6.65	□□□□□ -1.34
CD44-231	ENST00000531110	FAP	Q12884	760 aa		6.65	□□□□□ -1.34
CD44-231	ENST00000531110	SURF1	Q15526	300 aa		6.65	□□□□□ -1.34
CD44-231	ENST00000531110	ZNF827	Q17R98	1081 aa		6.65	□□□□□ -1.34
CD44-231	ENST00000531110	NT5DC1	Q5TFE4	455 aa		6.65	□□□□□ -1.34
CD44-231	ENST00000531110	GRAMD4	Q6IC98	578 aa		6.65	□□□□□ -1.34
CD44-231	ENST00000531110	SLFN12L	Q6IEE8	588 aa		6.65	□□□□□ -1.34
CD44-231	ENST00000531110	TIGD7	Q6NT04	549 aa	Predicted RBP	6.65	□□□□□ -1.34
CD44-231	ENST00000531110	LRSAM1	Q6UWE0	723 aa		6.65	□□□□□ -1.34
CD44-231	ENST00000531110	TTLL10	Q6ZVT0	673 aa		6.65	□□□□□ -1.34
CD44-231	ENST00000531110	C7orf31	Q8N865	590 aa		6.65	□□□□□ -1.34
CD44-231	ENST00000531110	TEPSIN	Q96N21	525 aa		6.65	□□□□□ -1.34
CD44-231	ENST00000531110	GPR101	Q96P66	508 aa	Predicted RBP	6.65	□□□□□ -1.34
CD44-231	ENST00000531110	MSL2	Q9HCI7	577 aa		6.65	□□□□□ -1.34
CD44-231	ENST00000531110	USP40	Q9NVE5	1235 aa		6.65	□□□□□ -1.34
CD44-231	ENST00000531110	RTEL1	Q9NZ71	1219 aa		6.65	□□□□□ -1.34
CD44-231	ENST00000531110	ABCF2	Q9UG63	623 aa		6.65	□□□□□ -1.34

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