RNA–Protein interactions for RNA: ENST00000513346.5

TCOF1-211, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,646 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-211ENST00000513346 RSAD2Q8WXG1 361 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 RAPGEF5Q92565 580 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 CAVIN3Q969G5 261 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 TEKT3Q9BXF9 490 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 EMILIN3Q9NT22 766 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 TFR2Q9UP52 801 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 KIAA1024Q9UPX6 916 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 MYO3BQ8WXR4 1341 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 SKAP2O75563 359 aaPredicted RBP12.07□□□□□ -0.48
TCOF1-211ENST00000513346 HAUS5O94927 633 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 ESRRGP62508 458 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 CYP4A11Q02928 519 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 FAM102BQ5T8I3 360 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 GCNT4Q9P109 453 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 NEDD4P46934 1319 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 WDR91A4D1P6 747 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 PLEKHA8P1O95397 391 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 ATP6V1G2O95670 118 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 ZNF18P17022 549 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 HSD17B3P37058 310 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 PDIA6Q15084 440 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 KIF2BQ8N4N8 673 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 METTL13Q8N6R0 699 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 NBPF3Q9H094 633 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 DNAJC17Q9NVM6 304 aaKnown RBP12.07□□□□□ -0.48
TCOF1-211ENST00000513346 ZFATQ9P243 1243 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 SEC23IPQ9Y6Y8 1000 aaKnown RBP12.07□□□□□ -0.48
TCOF1-211ENST00000513346 FER1L4A9Z1Z3 1794 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 IQCA1LA6NCM1 817 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 PPP1R3GB7ZBB8 358 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 SYF2O95926 243 aaKnown RBP12.07□□□□□ -0.48
TCOF1-211ENST00000513346 NQO1P15559 274 aaKnown RBP12.07□□□□□ -0.48
TCOF1-211ENST00000513346 CHRNA3P32297 505 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 SLC16A2P36021 539 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 BFSP1Q12934 665 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 DHX34Q14147 1143 aaKnown RBP12.07□□□□□ -0.48
TCOF1-211ENST00000513346 PTPAQ15257 358 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 YTHDF3Q7Z739 585 aaKnown RBP12.07□□□□□ -0.48
TCOF1-211ENST00000513346 FAM178BQ8IXR5 827 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 NLRP7Q8WX94 980 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 TMBIM4Q9HC24 238 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 DLGAP2Q9P1A6 1054 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 SSX2IPQ9Y2D8 614 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 MROH2AA6NES4 1674 aa12.07□□□□□ -0.48
TCOF1-211ENST00000513346 A0A0G2JND7 137 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 PVALEFA0A1B0GWK0 134 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 NVLO15381 856 aaKnown RBP12.06□□□□□ -0.48
TCOF1-211ENST00000513346 INHBAP08476 426 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 BMP3P12645 472 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 LLGL1Q15334 1064 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 USP17L2Q6R6M4 530 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 EP400NLQ6ZTU2 488 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 CPDO75976 1380 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 SORBS3O60504 671 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 HNRNPCP07910 306 aaKnown RBP eCLIP12.06□□□□□ -0.48
TCOF1-211ENST00000513346 GHRP10912 638 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 ATF7P17544 494 aaPredicted RBP12.06□□□□□ -0.48
TCOF1-211ENST00000513346 COPS2P61201 443 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 ITIH4Q14624 930 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 GRAMD1BQ3KR37 738 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 ANKRD20A8PQ5CZ79 823 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 TBC1D9BQ66K14 1250 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 GADD45GIP1Q8TAE8 222 aaPredicted RBP12.06□□□□□ -0.48
TCOF1-211ENST00000513346 HNRNPCL1O60812 293 aaKnown RBP12.06□□□□□ -0.48
TCOF1-211ENST00000513346 MT-ND3P03897 115 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 CYP2D6P10635 497 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 PSMC2P35998 433 aaKnown RBP12.06□□□□□ -0.48
TCOF1-211ENST00000513346 TRIP13Q15645 432 aaPredicted RBP12.06□□□□□ -0.48
TCOF1-211ENST00000513346 ANKRD40Q6AI12 368 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 PPP4R3CPQ6ZMV5 832 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 FAM186BQ8IYM0 893 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 FUKQ8N0W3 1084 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 SPDYE1Q8NFV5 336 aaPredicted RBP12.06□□□□□ -0.48
TCOF1-211ENST00000513346 ZNF653Q96CK0 615 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 EHD4Q9H223 541 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 PAPOLBQ9NRJ5 636 aaKnown RBP12.06□□□□□ -0.48
TCOF1-211ENST00000513346 VIRMAQ69YN4 1812 aaKnown RBP12.06□□□□□ -0.48
TCOF1-211ENST00000513346 TRPA1O75762 1119 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 TBCKQ8TEA7 893 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 DNAJC7Q99615 494 aa12.06□□□□□ -0.48
TCOF1-211ENST00000513346 PXDNLA1KZ92 1463 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 A0A1W2PQJ5 194 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 TTI1O43156 1089 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 KCNA3P22001 575 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 GUCY1A2P33402 732 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 PAPOLAP51003 745 aaKnown RBP12.05□□□□□ -0.48
TCOF1-211ENST00000513346 MYL7Q01449 175 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 KCTD2Q14681 263 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 FAM47CQ5HY64 1035 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 PPM1KQ8N3J5 372 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 USP38Q8NB14 1042 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 PIGSQ96S52 555 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 DDX20Q9UHI6 824 aaKnown RBP12.05□□□□□ -0.48
TCOF1-211ENST00000513346 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.05□□□□□ -0.48
TCOF1-211ENST00000513346 AP2B1P63010 937 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 ZBTB8OSQ8IWT0 167 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 PIP4K2CQ8TBX8 421 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 CASKIN2Q8WXE0 1202 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 NDE1Q9NXR1 346 aa12.05□□□□□ -0.48
TCOF1-211ENST00000513346 CD163L1Q9NR16 1453 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms