RNA–Protein interactions for RNA: ENST00000498213.1

USP54-217, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 815 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-217ENST00000498213 LZTR1Q8N653 840 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 MCMBPQ9BTE3 642 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 LRFN3Q9BTN0 628 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 C1QTNF1Q9BXJ1 281 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 PRKAG3Q9UGI9 489 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 NUDT5Q9UKK9 219 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 FAN1Q9Y2M0 1017 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 RWDD3Q9Y3V2 267 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 SNED1Q8TER0 1413 aa5.23□□□□□ -1.57
USP54-217ENST00000498213 KLRG2A4D1S0 409 aaPredicted RBP5.22□□□□□ -1.57
USP54-217ENST00000498213 MAGEA10P43363 369 aaPredicted RBP5.22□□□□□ -1.57
USP54-217ENST00000498213 AFF3P51826 1226 aaKnown RBP5.22□□□□□ -1.57
USP54-217ENST00000498213 NCKAP1LP55160 1127 aa5.22□□□□□ -1.57
USP54-217ENST00000498213 FKBP1BP68106 108 aa5.22□□□□□ -1.57
USP54-217ENST00000498213 SCRN1Q12765 414 aa5.22□□□□□ -1.57
USP54-217ENST00000498213 TCIRG1Q13488 830 aa5.22□□□□□ -1.57
USP54-217ENST00000498213 TARBP2Q15633 366 aaKnown RBP5.22□□□□□ -1.57
USP54-217ENST00000498213 FXNQ16595 210 aa5.22□□□□□ -1.57
USP54-217ENST00000498213 ZNF530Q6P9A1 599 aaPredicted RBP5.22□□□□□ -1.57
USP54-217ENST00000498213 CNKSR3Q6P9H4 555 aa5.22□□□□□ -1.57
USP54-217ENST00000498213 FAM178BQ8IXR5 827 aa5.22□□□□□ -1.57
USP54-217ENST00000498213 KCNC2Q96PR1 638 aa5.22□□□□□ -1.57
USP54-217ENST00000498213 CLEC1BQ9P126 229 aa5.22□□□□□ -1.57
USP54-217ENST00000498213 SUSD2Q9UGT4 822 aa5.22□□□□□ -1.57
USP54-217ENST00000498213 EMC9Q9Y3B6 208 aa5.22□□□□□ -1.57
USP54-217ENST00000498213 ADAMTS20P59510 1910 aa5.22□□□□□ -1.57
USP54-217ENST00000498213 CDHR2Q9BYE9 1310 aa5.22□□□□□ -1.57
USP54-217ENST00000498213 BDP1A6H8Y1 2624 aa5.21□□□□□ -1.58
USP54-217ENST00000498213 ZC3H12DA2A288 527 aaKnown RBP5.21□□□□□ -1.58
USP54-217ENST00000498213 YDJCA8MPS7 323 aa5.21□□□□□ -1.58
USP54-217ENST00000498213 AGRPO00253 132 aa5.21□□□□□ -1.58
USP54-217ENST00000498213 BUB1BO60566 1050 aaPredicted RBP5.21□□□□□ -1.58
USP54-217ENST00000498213 CAMTA2O94983 1202 aa5.21□□□□□ -1.58
USP54-217ENST00000498213 TNNT2P45379 298 aaPredicted RBP5.21□□□□□ -1.58
USP54-217ENST00000498213 GTF2IRD2BQ6EKJ0 949 aa5.21□□□□□ -1.58
USP54-217ENST00000498213 FAM109BQ6ICB4 259 aaPredicted RBP5.21□□□□□ -1.58
USP54-217ENST00000498213 GTF2IRD2Q86UP8 949 aa5.21□□□□□ -1.58
USP54-217ENST00000498213 USP38Q8NB14 1042 aa5.21□□□□□ -1.58
USP54-217ENST00000498213 UHRF1Q96T88 793 aaPredicted RBP5.21□□□□□ -1.58
USP54-217ENST00000498213 GULP1Q9UBP9 304 aa5.21□□□□□ -1.58
USP54-217ENST00000498213 TJP1Q07157 1748 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 ANKRD26Q9UPS8 1709 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 B2RBV5 119 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 PSMD14O00487 310 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 IRS4O14654 1257 aaPredicted RBP5.2□□□□□ -1.58
USP54-217ENST00000498213 GJB1P08034 283 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 CCL5P13501 91 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 PLS3P13797 630 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 FOSL2P15408 326 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 ETFBP38117 255 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 PRR5P85299 388 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 PLEKHO1Q53GL0 409 aaPredicted RBP5.2□□□□□ -1.58
USP54-217ENST00000498213 TRIM59Q8IWR1 403 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 PPM1EQ8WY54 764 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 ALG3Q92685 438 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 PEX11GQ96HA9 241 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 SIN3AQ96ST3 1273 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 ARHGAP39Q9C0H5 1083 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 EPHX3Q9H6B9 360 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 GPRC5CQ9NQ84 441 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 FZD1Q9UP38 647 aa5.2□□□□□ -1.58
USP54-217ENST00000498213 MANSC4A6NHS7 340 aaPredicted RBP5.19□□□□□ -1.58
USP54-217ENST00000498213 E9PSI1 815 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 MYO1BO43795 1136 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 SUSD5O60279 629 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 TRIM13O60858 407 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 STARD3NLO95772 234 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 FUCA1P04066 466 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 SNRPB2P08579 225 aaKnown RBP5.19□□□□□ -1.58
USP54-217ENST00000498213 FGRP09769 529 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 KCNJ6P48051 423 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 ARHGEF6Q15052 776 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 DBX2Q6ZNG2 339 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 EEPD1Q7L9B9 569 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 NPM2Q86SE8 214 aaKnown RBP5.19□□□□□ -1.58
USP54-217ENST00000498213 IGDCC3Q8IVU1 814 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 PANK1Q8TE04 598 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 U2AF1L4Q8WU68 220 aaKnown RBP5.19□□□□□ -1.58
USP54-217ENST00000498213 BTN2A2Q8WVV5 523 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 DPF2Q92785 391 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 RPGRQ92834 1020 aaKnown RBP5.19□□□□□ -1.58
USP54-217ENST00000498213 PWWP2AQ96N64 755 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 TINF2Q9BSI4 451 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 RXFP1Q9HBX9 757 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 PODXL2Q9NZ53 605 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 MARCH2Q9P0N8 246 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 PCDHA5Q9Y5H7 936 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 NCOR1O75376 2440 aa5.19□□□□□ -1.58
USP54-217ENST00000498213 C7orf72A4D263 438 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 KRT37O76014 449 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 SASH1O94885 1247 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 TFRCP02786 760 aaKnown RBP5.18□□□□□ -1.58
USP54-217ENST00000498213 A1BGP04217 495 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 THBDP07204 575 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 GLI4P10075 376 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 ECI1P42126 302 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 LIMS1P48059 325 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 PIP4K2AP48426 406 aaPredicted RBP5.18□□□□□ -1.58
USP54-217ENST00000498213 INHBEP58166 350 aa5.18□□□□□ -1.58
USP54-217ENST00000498213 C1orf141Q5JVX7 400 aa5.18□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms