RNA–Protein interactions for RNA: ENST00000493341.1

VPS13A-212, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,001 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-212ENST00000493341 hCG_1642624A0A1W2PR95 340 aa5.68□□□□□ -1.5
VPS13A-212ENST00000493341 FADS2P1A8MWK0 482 aa5.68□□□□□ -1.5
VPS13A-212ENST00000493341 TNFSF4P23510 183 aa5.68□□□□□ -1.5
VPS13A-212ENST00000493341 EDNRBP24530 442 aa5.68□□□□□ -1.5
VPS13A-212ENST00000493341 AGFG1P52594 562 aaKnown RBP5.68□□□□□ -1.5
VPS13A-212ENST00000493341 EPHA5P54756 1037 aa5.68□□□□□ -1.5
VPS13A-212ENST00000493341 SPIDRQ14159 915 aa5.68□□□□□ -1.5
VPS13A-212ENST00000493341 CHRNA2Q15822 529 aa5.68□□□□□ -1.5
VPS13A-212ENST00000493341 ANO4Q32M45 955 aa5.68□□□□□ -1.5
VPS13A-212ENST00000493341 PAN2Q504Q3 1202 aaKnown RBP5.68□□□□□ -1.5
VPS13A-212ENST00000493341 BEND7Q8N7W2 519 aaPredicted RBP5.68□□□□□ -1.5
VPS13A-212ENST00000493341 MAP6Q96JE9 813 aa5.68□□□□□ -1.5
VPS13A-212ENST00000493341 CERS4Q9HA82 394 aa5.68□□□□□ -1.5
VPS13A-212ENST00000493341 GPRC5BQ9NZH0 403 aa5.68□□□□□ -1.5
VPS13A-212ENST00000493341 SNX13Q9Y5W8 968 aa5.68□□□□□ -1.5
VPS13A-212ENST00000493341 NR2E3Q9Y5X4 410 aa5.68□□□□□ -1.5
VPS13A-212ENST00000493341 A0A1W2PQ45 241 aaPredicted RBP5.67□□□□□ -1.5
VPS13A-212ENST00000493341 A0A1W2PQJ5 194 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 A0A1W2PQY0 241 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 RNF225M0QZC1 329 aaPredicted RBP5.67□□□□□ -1.5
VPS13A-212ENST00000493341 ARHGEF15O94989 841 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 F13BP05160 661 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 RTP1P59025 263 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 GRIN1Q05586 938 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 ELF2Q15723 593 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 C3orf36Q3SXR2 165 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 MAEAQ7L5Y9 396 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 DPP9Q86TI2 863 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 CILP2Q8IUL8 1156 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 KRT78Q8N1N4 520 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 NLGN2Q8NFZ4 835 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 NRG4Q8WWG1 115 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 ATXN2LQ8WWM7 1075 aaKnown RBP5.67□□□□□ -1.5
VPS13A-212ENST00000493341 KIAA1191Q96A73 305 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 FOXRED1Q96CU9 486 aaPredicted RBP5.67□□□□□ -1.5
VPS13A-212ENST00000493341 MAML3Q96JK9 1138 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 WNT8AQ9H1J5 351 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 MKNK2Q9HBH9 465 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 DMRT3Q9NQL9 472 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 TMPRSS11EQ9UL52 423 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 PCDH8O95206 1070 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 CCT5P48643 541 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 SLC6A3Q01959 620 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 MALLQ13021 153 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 LDHAL6AQ6ZMR3 332 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 SYDE1Q6ZW31 735 aaPredicted RBP5.67□□□□□ -1.5
VPS13A-212ENST00000493341 SLCO6A1Q86UG4 719 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 PLD6Q8N2A8 252 aaKnown RBP5.67□□□□□ -1.5
VPS13A-212ENST00000493341 SPATA5Q8NB90 893 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 DPF2Q92785 391 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 ARMT1Q9H993 441 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 PDLIM7Q9NR12 457 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 IMPACTQ9P2X3 320 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 NOL12Q9UGY1 213 aaKnown RBP eCLIP5.67□□□□□ -1.5
VPS13A-212ENST00000493341 PRSS50Q9UI38 385 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 USP18Q9UMW8 372 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 STXBP5LQ9Y2K9 1186 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 RAXQ9Y2V3 346 aa5.67□□□□□ -1.5
VPS13A-212ENST00000493341 PRAMEF22A3QJZ6 481 aa5.66□□□□□ -1.5
VPS13A-212ENST00000493341 USP2O75604 605 aaPredicted RBP5.66□□□□□ -1.5
VPS13A-212ENST00000493341 COL8A1P27658 744 aa5.66□□□□□ -1.5
VPS13A-212ENST00000493341 PPM1AP35813 382 aa5.66□□□□□ -1.5
VPS13A-212ENST00000493341 IL6STP40189 918 aaPredicted RBP5.66□□□□□ -1.5
VPS13A-212ENST00000493341 CORO7P57737 925 aa5.66□□□□□ -1.5
VPS13A-212ENST00000493341 ADCY2Q08462 1091 aa5.66□□□□□ -1.5
VPS13A-212ENST00000493341 MYBPC3Q14896 1274 aa5.66□□□□□ -1.5
VPS13A-212ENST00000493341 EMC4Q5J8M3 183 aa5.66□□□□□ -1.5
VPS13A-212ENST00000493341 FAM209BQ5JX69 171 aa5.66□□□□□ -1.5
VPS13A-212ENST00000493341 PRAMEF18Q5VWM3 479 aa5.66□□□□□ -1.5
VPS13A-212ENST00000493341 CYP4F22Q6NT55 531 aa5.66□□□□□ -1.5
VPS13A-212ENST00000493341 MMS22LQ6ZRQ5 1243 aa5.66□□□□□ -1.5
VPS13A-212ENST00000493341 CEP128Q6ZU80 1094 aa5.66□□□□□ -1.5
VPS13A-212ENST00000493341 RTN4RL1Q86UN2 441 aaPredicted RBP5.66□□□□□ -1.5
VPS13A-212ENST00000493341 LYSMD2Q8IV50 215 aa5.66□□□□□ -1.5
VPS13A-212ENST00000493341 KLHDC4Q8TBB5 520 aa5.66□□□□□ -1.5
VPS13A-212ENST00000493341 NT5C1BQ96P26 610 aa5.66□□□□□ -1.5
VPS13A-212ENST00000493341 KMT5AQ9NQR1 393 aa5.66□□□□□ -1.5
VPS13A-212ENST00000493341 ASH2LQ9UBL3 628 aa5.66□□□□□ -1.5
VPS13A-212ENST00000493341 TPCN1Q9ULQ1 816 aa5.66□□□□□ -1.5
VPS13A-212ENST00000493341 GOLGA6L22H0YM25 854 aa5.65□□□□□ -1.5
VPS13A-212ENST00000493341 ACOT7O00154 380 aa5.65□□□□□ -1.5
VPS13A-212ENST00000493341 NCK2O43639 380 aa5.65□□□□□ -1.5
VPS13A-212ENST00000493341 TADA3O75528 432 aa5.65□□□□□ -1.5
VPS13A-212ENST00000493341 FTLP02792 175 aaPredicted RBP5.65□□□□□ -1.5
VPS13A-212ENST00000493341 PPARAQ07869 468 aa5.65□□□□□ -1.5
VPS13A-212ENST00000493341 IL10RAQ13651 578 aa5.65□□□□□ -1.5
VPS13A-212ENST00000493341 POLD3Q15054 466 aaPredicted RBP5.65□□□□□ -1.5
VPS13A-212ENST00000493341 LCE2CQ5TA81 110 aa5.65□□□□□ -1.5
VPS13A-212ENST00000493341 SLFN12LQ6IEE8 588 aa5.65□□□□□ -1.5
VPS13A-212ENST00000493341 KIAA1841Q6NSI8 718 aa5.65□□□□□ -1.5
VPS13A-212ENST00000493341 MILR1Q7Z6M3 343 aa5.65□□□□□ -1.5
VPS13A-212ENST00000493341 TRIM48Q8IWZ4 208 aa5.65□□□□□ -1.5
VPS13A-212ENST00000493341 MYCT1Q8N699 235 aa5.65□□□□□ -1.5
VPS13A-212ENST00000493341 OR14C36Q8NHC7 312 aa5.65□□□□□ -1.5
VPS13A-212ENST00000493341 CDC5LQ99459 802 aaKnown RBP5.65□□□□□ -1.5
VPS13A-212ENST00000493341 OSBPL1AQ9BXW6 950 aa5.65□□□□□ -1.5
VPS13A-212ENST00000493341 UCKL1Q9NWZ5 548 aa5.65□□□□□ -1.5
VPS13A-212ENST00000493341 ZNF69Q9UC07 566 aa5.65□□□□□ -1.5
VPS13A-212ENST00000493341 EBF1Q9UH73 591 aa5.65□□□□□ -1.5
VPS13A-212ENST00000493341 SIT1Q9Y3P8 196 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 42.2 ms