RNA–Protein interactions for RNA: ENST00000478573.6

CDC42BPA-212, Transcript of CDC42 binding protein kinase alpha, humanhuman

TSL 5

Gene CDC42BPA, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDC42BPA-212ENST00000478573 GPATCH3Q96I76 525 aa5.72□□□□□ -1.49
CDC42BPA-212ENST00000478573 CELF4Q9BZC1 486 aaKnown RBP5.72□□□□□ -1.49
CDC42BPA-212ENST00000478573 IFT57Q9NWB7 429 aa5.72□□□□□ -1.49
CDC42BPA-212ENST00000478573 SFMBT1Q9UHJ3 866 aa5.72□□□□□ -1.49
CDC42BPA-212ENST00000478573 SLC12A8A0AV02 714 aa5.71□□□□□ -1.5
CDC42BPA-212ENST00000478573 RASSF10A6NK89 507 aa5.71□□□□□ -1.5
CDC42BPA-212ENST00000478573 NARSO43776 548 aaKnown RBP5.71□□□□□ -1.5
CDC42BPA-212ENST00000478573 KRT37O76014 449 aa5.71□□□□□ -1.5
CDC42BPA-212ENST00000478573 MASP1P48740 699 aa5.71□□□□□ -1.5
CDC42BPA-212ENST00000478573 SLC7A14Q8TBB6 771 aa5.71□□□□□ -1.5
CDC42BPA-212ENST00000478573 CALML6Q8TD86 181 aa5.71□□□□□ -1.5
CDC42BPA-212ENST00000478573 NEU4Q8WWR8 484 aaPredicted RBP5.71□□□□□ -1.5
CDC42BPA-212ENST00000478573 MFSD3Q96ES6 412 aa5.71□□□□□ -1.5
CDC42BPA-212ENST00000478573 TRIM8Q9BZR9 551 aa5.71□□□□□ -1.5
CDC42BPA-212ENST00000478573 ASB1Q9Y576 335 aa5.71□□□□□ -1.5
CDC42BPA-212ENST00000478573 SLC26A4O43511 780 aa5.7□□□□□ -1.5
CDC42BPA-212ENST00000478573 APEX1P27695 318 aaKnown RBP5.7□□□□□ -1.5
CDC42BPA-212ENST00000478573 STAT3P40763 770 aa5.7□□□□□ -1.5
CDC42BPA-212ENST00000478573 IRF9Q00978 393 aa5.7□□□□□ -1.5
CDC42BPA-212ENST00000478573 MAP3K12Q12852 859 aa5.7□□□□□ -1.5
CDC42BPA-212ENST00000478573 PABPC4Q13310 644 aaKnown RBP eCLIP5.7□□□□□ -1.5
CDC42BPA-212ENST00000478573 CRHR2Q13324 411 aa5.7□□□□□ -1.5
CDC42BPA-212ENST00000478573 ADAM15Q13444 863 aa5.7□□□□□ -1.5
CDC42BPA-212ENST00000478573 TUBA3CQ13748 450 aa5.7□□□□□ -1.5
CDC42BPA-212ENST00000478573 TUBA3EQ6PEY2 450 aa5.7□□□□□ -1.5
CDC42BPA-212ENST00000478573 BRAPQ7Z569 592 aa5.7□□□□□ -1.5
CDC42BPA-212ENST00000478573 NIM1KQ8IY84 436 aa5.7□□□□□ -1.5
CDC42BPA-212ENST00000478573 C2orf69Q8N8R5 385 aa5.7□□□□□ -1.5
CDC42BPA-212ENST00000478573 GSTCDQ8NEC7 633 aa5.7□□□□□ -1.5
CDC42BPA-212ENST00000478573 NELFAQ9H3P2 528 aa5.7□□□□□ -1.5
CDC42BPA-212ENST00000478573 MAGEL2Q9UJ55 1249 aa5.7□□□□□ -1.5
CDC42BPA-212ENST00000478573 B3GALT1Q9Y5Z6 326 aa5.7□□□□□ -1.5
CDC42BPA-212ENST00000478573 PPM1GO15355 546 aaPredicted RBP5.69□□□□□ -1.5
CDC42BPA-212ENST00000478573 RAPGEF3O95398 923 aa5.69□□□□□ -1.5
CDC42BPA-212ENST00000478573 HGFACQ04756 655 aa5.69□□□□□ -1.5
CDC42BPA-212ENST00000478573 RIN1Q13671 783 aa5.69□□□□□ -1.5
CDC42BPA-212ENST00000478573 ACAP1Q15027 740 aa5.69□□□□□ -1.5
CDC42BPA-212ENST00000478573 OVCH1Q7RTY7 1134 aa5.69□□□□□ -1.5
CDC42BPA-212ENST00000478573 IGSF22Q8N9C0 903 aa5.69□□□□□ -1.5
CDC42BPA-212ENST00000478573 CACTINQ8WUQ7 758 aaKnown RBP5.69□□□□□ -1.5
CDC42BPA-212ENST00000478573 CHFRQ96EP1 664 aa5.69□□□□□ -1.5
CDC42BPA-212ENST00000478573 SCLYQ96I15 445 aa5.69□□□□□ -1.5
CDC42BPA-212ENST00000478573 MSL2Q9HCI7 577 aa5.69□□□□□ -1.5
CDC42BPA-212ENST00000478573 INTS7Q9NVH2 962 aaKnown RBP5.69□□□□□ -1.5
CDC42BPA-212ENST00000478573 NOP58Q9Y2X3 529 aaKnown RBP5.69□□□□□ -1.5
CDC42BPA-212ENST00000478573 GIT1Q9Y2X7 761 aa5.69□□□□□ -1.5
CDC42BPA-212ENST00000478573 REXO2Q9Y3B8 237 aaKnown RBP5.69□□□□□ -1.5
CDC42BPA-212ENST00000478573 COL4A3BPQ9Y5P4 624 aa5.69□□□□□ -1.5
CDC42BPA-212ENST00000478573 A0A1W2PRX2 142 aa5.68□□□□□ -1.5
CDC42BPA-212ENST00000478573 GOLGA6L22H0YM25 854 aa5.68□□□□□ -1.5
CDC42BPA-212ENST00000478573 ADH4P08319 380 aa5.68□□□□□ -1.5
CDC42BPA-212ENST00000478573 TMEM177Q53S58 311 aa5.68□□□□□ -1.5
CDC42BPA-212ENST00000478573 CATSPEREQ5SY80 951 aa5.68□□□□□ -1.5
CDC42BPA-212ENST00000478573 KRT26Q7Z3Y9 468 aa5.68□□□□□ -1.5
CDC42BPA-212ENST00000478573 DLG3Q92796 817 aa5.68□□□□□ -1.5
CDC42BPA-212ENST00000478573 CLUHP3Q96NS8 147 aa5.68□□□□□ -1.5
CDC42BPA-212ENST00000478573 MMRN2Q9H8L6 949 aa5.68□□□□□ -1.5
CDC42BPA-212ENST00000478573 AGO3Q9H9G7 860 aaKnown RBP5.68□□□□□ -1.5
CDC42BPA-212ENST00000478573 PCDH12Q9NPG4 1184 aa5.68□□□□□ -1.5
CDC42BPA-212ENST00000478573 C11orf21Q9P2W6 132 aa5.68□□□□□ -1.5
CDC42BPA-212ENST00000478573 WDR33Q9C0J8 1336 aaKnown RBP5.68□□□□□ -1.5
CDC42BPA-212ENST00000478573 A0A087X0B3 334 aa5.67□□□□□ -1.5
CDC42BPA-212ENST00000478573 IBSPP21815 317 aaPredicted RBP5.67□□□□□ -1.5
CDC42BPA-212ENST00000478573 SDHAP31040 664 aa5.67□□□□□ -1.5
CDC42BPA-212ENST00000478573 ATP2C1P98194 919 aaPredicted RBP5.67□□□□□ -1.5
CDC42BPA-212ENST00000478573 ALDH6A1Q02252 535 aaKnown RBP5.67□□□□□ -1.5
CDC42BPA-212ENST00000478573 ABHD17CQ6PCB6 329 aa5.67□□□□□ -1.5
CDC42BPA-212ENST00000478573 FGD2Q7Z6J4 655 aa5.67□□□□□ -1.5
CDC42BPA-212ENST00000478573 ADGRE4PQ86SQ3 457 aa5.67□□□□□ -1.5
CDC42BPA-212ENST00000478573 TRIM39Q9HCM9 518 aa5.67□□□□□ -1.5
CDC42BPA-212ENST00000478573 MAGEC2Q9UBF1 373 aaPredicted RBP5.67□□□□□ -1.5
CDC42BPA-212ENST00000478573 SMARCA4P51532 1647 aa5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 hCG_2014768A0A024R1R8 64 aa5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 TCRBV16S1A1N1A0A5B0 115 aa5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 CYP27B1O15528 508 aa5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 AMPD3Q01432 767 aa5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 SAFB2Q14151 953 aaKnown RBP eCLIP5.66□□□□□ -1.54e-6■■■□□ 17.1
CDC42BPA-212ENST00000478573 C21orf62-AS1Q17RA5 79 aa5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 KLHDC10Q6PID8 442 aa5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 THNSL2Q86YJ6 484 aa5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 DHX37Q8IY37 1157 aaKnown RBP5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 THEMISQ8N1K5 641 aaPredicted RBP5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 ZNF483Q8TF39 744 aaPredicted RBP5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 GCDHQ92947 438 aaPredicted RBP5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 RPL10LQ96L21 214 aaKnown RBP5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 CEP89Q96ST8 783 aa5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 BOCQ9BWV1 1114 aa5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 IKZF4Q9H2S9 585 aa5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 AURKAIP1Q9NWT8 199 aaPredicted RBP5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 SAE1Q9UBE0 346 aaPredicted RBP5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 HECAQ9UBI9 543 aaPredicted RBP5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 RBM8AQ9Y5S9 174 aaKnown RBP5.66□□□□□ -1.5
CDC42BPA-212ENST00000478573 GOLGA8BA8MQT2 603 aa5.65□□□□□ -1.5
CDC42BPA-212ENST00000478573 GSG1L2A8MUP6 293 aa5.65□□□□□ -1.5
CDC42BPA-212ENST00000478573 H2AFYO75367 372 aaKnown RBP5.65□□□□□ -1.5
CDC42BPA-212ENST00000478573 DNAJC8O75937 253 aaPredicted RBP5.65□□□□□ -1.5
CDC42BPA-212ENST00000478573 RGS3P49796 1198 aa5.65□□□□□ -1.5
CDC42BPA-212ENST00000478573 KIF11P52732 1056 aa5.65□□□□□ -1.5
CDC42BPA-212ENST00000478573 IGBP1P78318 339 aa5.65□□□□□ -1.5
CDC42BPA-212ENST00000478573 SLC6A3Q01959 620 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms