RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 USH1GQ495M9 461 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 C5orf22Q49AR2 442 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 CFAP221Q4G0U5 840 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 HSP90AA5PQ58FG0 334 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 HSP90AA4PQ58FG1 418 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 RAB12Q6IQ22 244 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 MIS18BP1Q6P0N0 1132 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 CCDC121Q6ZUS5 278 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 ZDHHC17Q8IUH5 632 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 AFAP1L2Q8N4X5 818 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 CCDC33Q8N5R6 958 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 SHCBP1Q8NEM2 672 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 DENND1AQ8TEH3 1009 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 LMBR1Q8WVP7 490 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 KIFAP3Q92845 792 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 SNF8Q96H20 258 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 JPH4Q96JJ6 628 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 STK31Q9BXU1 1019 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 SRCIN1Q9C0H9 1055 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 EHMT1Q9H9B1 1298 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 PDLIM7Q9NR12 457 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 L1RE1Q9UN81 338 aa3.79□□□□□ -1.8
UBR3-208ENST00000474426 CYP3A7-CYP3A51PA0A087WV96 503 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 NUTM2FA1L443 756 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 CCDC78A2IDD5 438 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 CCDC69A6NI79 296 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 SLC9B1P1A6NJY1 282 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 DCDC2CA8MYV0 355 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 DAB1O75553 588 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 CYP2E1P05181 493 aaPredicted RBP3.78□□□□□ -1.8
UBR3-208ENST00000474426 POLR2MP0CAP2 368 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 CTRB1P17538 263 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 HDCP19113 662 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 RPS6KB1P23443 525 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 CYP3A7P24462 503 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 HOXA6P31267 233 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 ACSL1P33121 698 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 HNF4AP41235 474 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 PPP1R2P41236 205 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 DIO1P49895 249 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 TKTL1P51854 596 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 GPR85P60893 370 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 MOGQ16653 247 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 QPCTQ16769 361 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 CCDC38Q502W7 563 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 TM4SF20Q53R12 229 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 RPS26P11Q5JNZ5 115 aaPredicted RBP3.78□□□□□ -1.8
UBR3-208ENST00000474426 CFAP157Q5JU67 520 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 CTRB2Q6GPI1 263 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 PPP1R2P3Q6NXS1 205 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 C6orf89Q6UWU4 347 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 PI16Q6UXB8 463 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 SYDE1Q6ZW31 735 aaPredicted RBP3.78□□□□□ -1.8
UBR3-208ENST00000474426 TADA2BQ86TJ2 420 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 ZSCAN29Q8IWY8 852 aaPredicted RBP3.78□□□□□ -1.8
UBR3-208ENST00000474426 ZNF654Q8IZM8 581 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 SIX5Q8N196 739 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 IRGQQ8WZA9 623 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 ZKSCAN4Q969J2 545 aaPredicted RBP3.78□□□□□ -1.8
UBR3-208ENST00000474426 SLC2A13Q96QE2 648 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 YME1L1Q96TA2 773 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 GAS2L1Q99501 681 aaPredicted RBP3.78□□□□□ -1.8
UBR3-208ENST00000474426 CIB1Q99828 191 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 TRIM5Q9C035 493 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 SIL1Q9H173 461 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 PLSCR4Q9NRQ2 329 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 ASNSD1Q9NWL6 643 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.78□□□□□ -1.8
UBR3-208ENST00000474426 GPR34Q9UPC5 381 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 RPH3AQ9Y2J0 694 aaPredicted RBP3.78□□□□□ -1.8
UBR3-208ENST00000474426 MSRB2Q9Y3D2 182 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 TTC21AQ8NDW8 1320 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 E2F8A0AVK6 867 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 C16orf96A6NNT2 1141 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 TSC22D2O75157 780 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 SLC22A3O75751 556 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 ENDOD1O94919 500 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 ABCB1P08183 1280 aaPredicted RBP3.78□□□□□ -1.8
UBR3-208ENST00000474426 HOXB1P14653 301 aaPredicted RBP3.78□□□□□ -1.8
UBR3-208ENST00000474426 NPTX2P47972 431 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 ALDH5A1P51649 535 aaPredicted RBP3.78□□□□□ -1.8
UBR3-208ENST00000474426 CCR3P51677 355 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 CYP4F8P98187 520 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 PRKCEQ02156 737 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 MXD4Q14582 209 aaPredicted RBP3.78□□□□□ -1.8
UBR3-208ENST00000474426 CYP27C1Q4G0S4 372 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 HABP4Q5JVS0 413 aaKnown RBP3.78□□□□□ -1.8
UBR3-208ENST00000474426 ITPRIPL1Q6GPH6 555 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 CCDC62Q6P9F0 684 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 ZYG11AQ6WRX3 759 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 HS2ST1Q7LGA3 356 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 NLRP9Q7RTR0 991 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 GATAD2AQ86YP4 633 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 FAM178BQ8IXR5 827 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 CEP76Q8TAP6 659 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 FBF1Q8TES7 1133 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 ANKS1AQ92625 1134 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 TTC17Q96AE7 1141 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 SLC10A4Q96EP9 437 aa3.78□□□□□ -1.8
UBR3-208ENST00000474426 PIGSQ96S52 555 aa3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 16.8 ms