RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 DOCK8Q8NF50 2099 aa6.21□□□□□ -1.41
HMGB1-207ENST00000468384 USP17L12C9JPN9 530 aa6.21□□□□□ -1.42
HMGB1-207ENST00000468384 USP17L21D6R901 530 aa6.21□□□□□ -1.42
HMGB1-207ENST00000468384 C2CD2LO14523 706 aa6.21□□□□□ -1.42
HMGB1-207ENST00000468384 CDX4O14627 284 aaPredicted RBP6.21□□□□□ -1.42
HMGB1-207ENST00000468384 B4GALT3O60512 393 aa6.21□□□□□ -1.42
HMGB1-207ENST00000468384 CD72P21854 359 aa6.21□□□□□ -1.42
HMGB1-207ENST00000468384 ERVFC1P60507 584 aa6.21□□□□□ -1.42
HMGB1-207ENST00000468384 CRTC2Q53ET0 693 aaPredicted RBP6.21□□□□□ -1.42
HMGB1-207ENST00000468384 HEATR6Q6AI08 1181 aaKnown RBP6.21□□□□□ -1.42
HMGB1-207ENST00000468384 ATG14Q6ZNE5 492 aa6.21□□□□□ -1.42
HMGB1-207ENST00000468384 CCDC149Q6ZUS6 474 aa6.21□□□□□ -1.42
HMGB1-207ENST00000468384 FBXO33Q7Z6M2 555 aa6.21□□□□□ -1.42
HMGB1-207ENST00000468384 LONP2Q86WA8 852 aa6.21□□□□□ -1.42
HMGB1-207ENST00000468384 VPS37DQ86XT2 251 aa6.21□□□□□ -1.42
HMGB1-207ENST00000468384 PLEKHM2Q8IWE5 1019 aa6.21□□□□□ -1.42
HMGB1-207ENST00000468384 MTG1Q9BT17 334 aaPredicted RBP6.21□□□□□ -1.42
HMGB1-207ENST00000468384 GINM1Q9NU53 330 aa6.21□□□□□ -1.42
HMGB1-207ENST00000468384 MAP10Q9P2G4 905 aa6.21□□□□□ -1.42
HMGB1-207ENST00000468384 ZBTB21Q9ULJ3 1066 aa6.21□□□□□ -1.42
HMGB1-207ENST00000468384 MRPL42Q9Y6G3 142 aaKnown RBP6.21□□□□□ -1.42
HMGB1-207ENST00000468384 IL16Q14005 1332 aa6.21□□□□□ -1.42
HMGB1-207ENST00000468384 AKAP9Q99996 3911 aa6.2□□□□□ -1.42
HMGB1-207ENST00000468384 FSCN2O14926 492 aa6.2□□□□□ -1.42
HMGB1-207ENST00000468384 NCAM2O15394 837 aa6.2□□□□□ -1.42
HMGB1-207ENST00000468384 MYL3P08590 195 aa6.2□□□□□ -1.42
HMGB1-207ENST00000468384 MX2P20592 715 aa6.2□□□□□ -1.42
HMGB1-207ENST00000468384 TARSP26639 723 aaKnown RBP6.2□□□□□ -1.42
HMGB1-207ENST00000468384 PRKAR2BP31323 418 aa6.2□□□□□ -1.42
HMGB1-207ENST00000468384 EIF2S3P41091 472 aaKnown RBP6.2□□□□□ -1.42
HMGB1-207ENST00000468384 USP14P54578 494 aa6.2□□□□□ -1.42
HMGB1-207ENST00000468384 PRKCQQ04759 706 aa6.2□□□□□ -1.42
HMGB1-207ENST00000468384 UBE3AQ05086 875 aa6.2□□□□□ -1.42
HMGB1-207ENST00000468384 MLF2Q15773 248 aaPredicted RBP6.2□□□□□ -1.42
HMGB1-207ENST00000468384 PLEKHG4Q58EX7 1191 aa6.2□□□□□ -1.42
HMGB1-207ENST00000468384 PDE12Q6L8Q7 609 aaKnown RBP6.2□□□□□ -1.42
HMGB1-207ENST00000468384 PIP4P1Q86T03 277 aa6.2□□□□□ -1.42
HMGB1-207ENST00000468384 FAM26EQ8N5C1 309 aa6.2□□□□□ -1.42
HMGB1-207ENST00000468384 FAM133AQ8N9E0 248 aa6.2□□□□□ -1.42
HMGB1-207ENST00000468384 AFG1LQ8WV93 481 aa6.2□□□□□ -1.42
HMGB1-207ENST00000468384 ADAMTS14Q8WXS8 1223 aa6.2□□□□□ -1.42
HMGB1-207ENST00000468384 NXPE3Q969Y0 559 aa6.2□□□□□ -1.42
HMGB1-207ENST00000468384 GTPBP3Q969Y2 492 aaKnown RBP6.2□□□□□ -1.42
HMGB1-207ENST00000468384 INSM2Q96T92 566 aaPredicted RBP6.2□□□□□ -1.42
HMGB1-207ENST00000468384 CHPF2Q9P2E5 772 aa6.2□□□□□ -1.42
HMGB1-207ENST00000468384 HERC5Q9UII4 1024 aaKnown RBP6.2□□□□□ -1.42
HMGB1-207ENST00000468384 TRABD2BA6NFA1 517 aa6.19□□□□□ -1.42
HMGB1-207ENST00000468384 CCR3P51677 355 aa6.19□□□□□ -1.42
HMGB1-207ENST00000468384 RHBDL3P58872 404 aa6.19□□□□□ -1.42
HMGB1-207ENST00000468384 CXADRP78310 365 aa6.19□□□□□ -1.42
HMGB1-207ENST00000468384 FAM193AP78312 1265 aa6.19□□□□□ -1.42
HMGB1-207ENST00000468384 DBN1Q16643 649 aa6.19□□□□□ -1.42
HMGB1-207ENST00000468384 ZNF618Q5T7W0 954 aa6.19□□□□□ -1.42
HMGB1-207ENST00000468384 ARMCX2Q7L311 632 aa6.19□□□□□ -1.42
HMGB1-207ENST00000468384 FEZF2Q8TBJ5 459 aa6.19□□□□□ -1.42
HMGB1-207ENST00000468384 EDARADDQ8WWZ3 215 aa6.19□□□□□ -1.42
HMGB1-207ENST00000468384 ZNF689Q96CS4 500 aaPredicted RBP6.19□□□□□ -1.42
HMGB1-207ENST00000468384 NELL2Q99435 816 aa6.19□□□□□ -1.42
HMGB1-207ENST00000468384 KIAA1683Q9H0B3 1180 aa6.19□□□□□ -1.42
HMGB1-207ENST00000468384 Q9Y3F1 56 aa6.19□□□□□ -1.42
HMGB1-207ENST00000468384 ATG2BQ96BY7 2078 aa6.19□□□□□ -1.42
HMGB1-207ENST00000468384 EMSYQ7Z589 1322 aa6.19□□□□□ -1.42
HMGB1-207ENST00000468384 CSPG4Q6UVK1 2322 aa6.19□□□□□ -1.42
HMGB1-207ENST00000468384 DNAJC25-GNG10A0A024R161 153 aa6.18□□□□□ -1.42
HMGB1-207ENST00000468384 N4BP1O75113 896 aaKnown RBP6.18□□□□□ -1.42
HMGB1-207ENST00000468384 NFATC3Q12968 1075 aa6.18□□□□□ -1.42
HMGB1-207ENST00000468384 PTK7Q13308 1070 aa6.18□□□□□ -1.42
HMGB1-207ENST00000468384 NCOA4Q13772 614 aa6.18□□□□□ -1.42
HMGB1-207ENST00000468384 TMEM132BQ14DG7 1078 aa6.18□□□□□ -1.42
HMGB1-207ENST00000468384 SLC44A4Q53GD3 710 aa6.18□□□□□ -1.42
HMGB1-207ENST00000468384 PLPP4Q5VZY2 271 aa6.18□□□□□ -1.42
HMGB1-207ENST00000468384 GDF6Q6KF10 455 aaPredicted RBP6.18□□□□□ -1.42
HMGB1-207ENST00000468384 RSPO2Q6UXX9 243 aaPredicted RBP6.18□□□□□ -1.42
HMGB1-207ENST00000468384 CACNA2D4Q7Z3S7 1137 aa6.18□□□□□ -1.42
HMGB1-207ENST00000468384 KBTBD6Q86V97 674 aa6.18□□□□□ -1.42
HMGB1-207ENST00000468384 TMC8Q8IU68 726 aa6.18□□□□□ -1.42
HMGB1-207ENST00000468384 RIOX2Q8IUF8 465 aa6.18□□□□□ -1.42
HMGB1-207ENST00000468384 RNF217Q8TC41 542 aa6.18□□□□□ -1.42
HMGB1-207ENST00000468384 FOXJ1Q92949 421 aa6.18□□□□□ -1.42
HMGB1-207ENST00000468384 MOCOSQ96EN8 888 aa6.18□□□□□ -1.42
HMGB1-207ENST00000468384 DDX11Q96FC9 970 aa6.18□□□□□ -1.42
HMGB1-207ENST00000468384 SGPP1Q9BX95 441 aa6.18□□□□□ -1.42
HMGB1-207ENST00000468384 SCN10AQ9Y5Y9 1956 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 SPAG17Q6Q759 2223 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 ANKRD18BA2A2Z9 1011 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 HIDE1A8MVS5 230 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 CCNYL3P0C7X3 344 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 AMPD1P23109 780 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 IRAK1P51617 712 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 GPC5P78333 572 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 SATB1Q01826 763 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 TRIM71Q2Q1W2 868 aaKnown RBP6.17□□□□□ -1.42
HMGB1-207ENST00000468384 CCDC144CPQ8IYA2 1237 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 CMTR1Q8N1G2 835 aaKnown RBP6.17□□□□□ -1.42
HMGB1-207ENST00000468384 PI4K2BQ8TCG2 481 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 SEPT8Q92599 483 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 ATG4CQ96DT6 458 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 OCSTAMPQ9BR26 566 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 TANGO6Q9C0B7 1094 aa6.17□□□□□ -1.42
HMGB1-207ENST00000468384 CHRDQ9H2X0 955 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms