RNA–Protein interactions for RNA: ENST00000464454.1

CLK1-208, Transcript of CDC like kinase 1, human

TSL 2

Gene CLK1, Length 484 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK1-208	ENST00000464454	RNF219	Q5W0B1	726 aa	Predicted RBP	5.65	□□□□□ -1.5
CLK1-208	ENST00000464454	ARHGEF18	Q6ZSZ5	1173 aa		5.65	□□□□□ -1.5
CLK1-208	ENST00000464454	KANSL1	Q7Z3B3	1105 aa		5.65	□□□□□ -1.5
CLK1-208	ENST00000464454	BMP8A	Q7Z5Y6	402 aa		5.65	□□□□□ -1.5
CLK1-208	ENST00000464454	RASSF3	Q86WH2	238 aa		5.65	□□□□□ -1.5
CLK1-208	ENST00000464454	RTKN2	Q8IZC4	609 aa		5.65	□□□□□ -1.5
CLK1-208	ENST00000464454	OR5AN1	Q8NGI8	311 aa		5.65	□□□□□ -1.5
CLK1-208	ENST00000464454	WNT8A	Q9H1J5	351 aa		5.65	□□□□□ -1.5
CLK1-208	ENST00000464454	POFUT1	Q9H488	388 aa		5.65	□□□□□ -1.5
CLK1-208	ENST00000464454	SAE1	Q9UBE0	346 aa	Predicted RBP	5.65	□□□□□ -1.5
CLK1-208	ENST00000464454	SYNPO2	Q9UMS6	1093 aa		5.65	□□□□□ -1.5
CLK1-208	ENST00000464454	INVS	Q9Y283	1065 aa		5.65	□□□□□ -1.5
CLK1-208	ENST00000464454	VWA7	Q9Y334	891 aa		5.65	□□□□□ -1.5
CLK1-208	ENST00000464454		A0A0G2JLL6	359 aa	Predicted RBP	5.64	□□□□□ -1.51
CLK1-208	ENST00000464454	LAMTOR5	O43504	91 aa		5.64	□□□□□ -1.51
CLK1-208	ENST00000464454	KDM1A	O60341	852 aa		5.64	□□□□□ -1.51
CLK1-208	ENST00000464454	CTSW	P56202	376 aa		5.64	□□□□□ -1.51
CLK1-208	ENST00000464454	NOLC1	Q14978	699 aa	Known RBP eCLIP	5.64	□□□□□ -1.51
CLK1-208	ENST00000464454	ZNF827	Q17R98	1081 aa		5.64	□□□□□ -1.51
CLK1-208	ENST00000464454	GPR155	Q7Z3F1	870 aa		5.64	□□□□□ -1.51
CLK1-208	ENST00000464454	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	5.64	□□□□□ -1.51
CLK1-208	ENST00000464454	FERMT3	Q86UX7	667 aa		5.64	□□□□□ -1.51
CLK1-208	ENST00000464454	SPATS2	Q86XZ4	545 aa	Known RBP	5.64	□□□□□ -1.51
CLK1-208	ENST00000464454	MYL10	Q9BUA6	226 aa		5.64	□□□□□ -1.51
CLK1-208	ENST00000464454	PITHD1	Q9GZP4	211 aa	Predicted RBP	5.64	□□□□□ -1.51
CLK1-208	ENST00000464454	ADAM7	Q9H2U9	754 aa		5.64	□□□□□ -1.51
CLK1-208	ENST00000464454	CDC42EP3	Q9UKI2	254 aa		5.64	□□□□□ -1.51
CLK1-208	ENST00000464454	NOC2L	Q9Y3T9	749 aa	Known RBP	5.64	□□□□□ -1.51
CLK1-208	ENST00000464454	SLC4A7	Q9Y6M7	1214 aa		5.64	□□□□□ -1.51
CLK1-208	ENST00000464454	PHLDB1	Q86UU1	1377 aa		5.64	□□□□□ -1.51
CLK1-208	ENST00000464454	GPR39	O43194	453 aa		5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	B4GALT4	O60513	344 aa		5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	H2AFY	O75367	372 aa	Known RBP	5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	PLAT	P00750	562 aa		5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	PDGFRB	P09619	1106 aa		5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	ZNF888	P0CJ79	500 aa	Predicted RBP	5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	GUCY2F	P51841	1108 aa		5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	PPP2CB	P62714	309 aa		5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	PPP2CA	P67775	309 aa		5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	TRIM68	Q6AZZ1	485 aa		5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	IQSEC1	Q6DN90	963 aa		5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	KLHDC10	Q6PID8	442 aa		5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	STAG1	Q8WVM7	1258 aa		5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	LPP	Q93052	612 aa		5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	GFM2	Q969S9	779 aa	Known RBP	5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	MTG2	Q9H4K7	406 aa		5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	MSL2	Q9HCI7	577 aa		5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	POLR3B	Q9NW08	1133 aa	Predicted RBP	5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	SLC5A4	Q9NY91	659 aa		5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	DENND2A	Q9ULE3	1009 aa		5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	DUSP10	Q9Y6W6	482 aa		5.63	□□□□□ -1.51
CLK1-208	ENST00000464454	ID4	P47928	161 aa		5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	EPHB4	P54760	987 aa		5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	RRAD	P55042	308 aa		5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	TMPRSS15	P98073	1019 aa		5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	FAM50A	Q14320	339 aa	Known RBP	5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	AGBL4	Q5VU57	503 aa		5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	SLFN13	Q68D06	897 aa		5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	USP30	Q70CQ3	517 aa		5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	NECAB2	Q7Z6G3	386 aa		5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	CXorf67	Q86X51	503 aa	Predicted RBP	5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	CXorf38	Q8TB03	319 aa		5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	DYDC2	Q96IM9	177 aa		5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	ZNF496	Q96IT1	587 aa	Predicted RBP	5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	HIST1H2AH	Q96KK5	128 aa		5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	CEP89	Q96ST8	783 aa		5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	HIST1H2AJ	Q99878	128 aa		5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	OR10A2	Q9H208	303 aa		5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	SEC61A2	Q9H9S3	476 aa		5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	METTL14	Q9HCE5	456 aa	Known RBP	5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	JADE2	Q9NQC1	790 aa		5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	ZNF536	O15090	1300 aa		5.62	□□□□□ -1.51
CLK1-208	ENST00000464454	WASHC2C	Q9Y4E1	1318 aa		5.62	□□□□□ -1.51
CLK1-208	ENST00000464454		A0A0A6YYJ9	748 aa		5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	OPHN1	O60890	802 aa		5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	GPR15	P49685	360 aa		5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	MRE11	P49959	708 aa		5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	STAT5B	P51692	787 aa		5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	RAC3	P60763	192 aa		5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	EXOSC10	Q01780	885 aa	Known RBP	5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	NFYC	Q13952	458 aa		5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	PCOLCE	Q15113	449 aa		5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	MAN2A1	Q16706	1144 aa		5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	BRDT	Q58F21	947 aa	Predicted RBP	5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	CCDC178	Q5BJE1	867 aa		5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	LHFPL2	Q6ZUX7	228 aa		5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	MYPN	Q86TC9	1320 aa		5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	CDYL2	Q8N8U2	506 aa		5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	CLRN3	Q8NCR9	226 aa		5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	RSAD2	Q8WXG1	361 aa		5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	ACAP3	Q96P50	834 aa		5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	NOL10	Q9BSC4	688 aa	Known RBP	5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	HAPLN2	Q9GZV7	340 aa		5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	PUS7L	Q9H0K6	701 aa	Known RBP	5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	CNOT11	Q9UKZ1	510 aa	Known RBP	5.61	□□□□□ -1.51
CLK1-208	ENST00000464454	ELL2	O00472	640 aa	Predicted RBP	5.6	□□□□□ -1.51
CLK1-208	ENST00000464454	ARHGAP6	O43182	974 aa		5.6	□□□□□ -1.51
CLK1-208	ENST00000464454	PRICKLE3	O43900	615 aa	Predicted RBP	5.6	□□□□□ -1.51
CLK1-208	ENST00000464454	NRP2	O60462	931 aa		5.6	□□□□□ -1.51
CLK1-208	ENST00000464454	CNOT4	O95628	575 aa	Known RBP	5.6	□□□□□ -1.51

Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms