RNA–Protein interactions for RNA: ENST00000425518.5

SMARCC1-202, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin subfamily c member 1, humanhuman

TSL 2

Gene SMARCC1, Length 3,827 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCC1-202ENST00000425518 ARHGEF26Q96DR7 871 aa8.17□□□□□ -1.1
SMARCC1-202ENST00000425518 HES6Q96HZ4 224 aa8.17□□□□□ -1.1
SMARCC1-202ENST00000425518 AMNQ9BXJ7 453 aa8.17□□□□□ -1.1
SMARCC1-202ENST00000425518 CCDC113Q9H0I3 377 aa8.17□□□□□ -1.1
SMARCC1-202ENST00000425518 VCPKMTQ9H867 229 aa8.17□□□□□ -1.1
SMARCC1-202ENST00000425518 IGSF9BQ9UPX0 1349 aa8.17□□□□□ -1.1
SMARCC1-202ENST00000425518 CYP3A7-CYP3A51PA0A087WV96 503 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 LOC102724159A0A0B4J2E5 919 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 CTNND1O60716 968 aaKnown RBP8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 SHBGP04278 402 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 CYP3A7P24462 503 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 JAM2P57087 298 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 PWP2Q15269 919 aaKnown RBP8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 SPRED3Q2MJR0 410 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 RINT1Q6NUQ1 792 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 TRMT1LQ7Z2T5 733 aaKnown RBP8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 CEP57Q86XR8 500 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 SPICE1Q8N0Z3 855 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 RASGEF1CQ8N431 466 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 EIF1ADQ8N9N8 165 aaKnown RBP8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 PSMD1Q99460 953 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 THAP2Q9H0W7 228 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 SLC40A1Q9NP59 571 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 PCDHAC2Q9Y5I4 1007 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 LAMB2P55268 1798 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 GOLGA6L10A0A0M3HER8 536 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 LMNB1P20700 586 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 SLCO1A2P46721 670 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 SWT1Q5T5J6 900 aaKnown RBP8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 AGBL2Q5U5Z8 902 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 GKAP1Q5VSY0 366 aaPredicted RBP8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 HS2ST1Q7LGA3 356 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 YTHDF3Q7Z739 585 aaKnown RBP8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 PALB2Q86YC2 1186 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 DHX37Q8IY37 1157 aaKnown RBP8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 SYCP3Q8IZU3 236 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 RFFLQ8WZ73 363 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 OSBPL7Q9BZF2 842 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 RAB17Q9H0T7 212 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 ERVK-5Q9HDB9 667 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 CTTNBP2NLQ9P2B4 639 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 MYH1P12882 1939 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 F5H6K3 240 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 DNM1LO00429 736 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 ZBTB48P10074 688 aaPredicted RBP8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 FMO5P49326 533 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 KLRC3Q07444 240 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 AP3B2Q13367 1082 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 MKRN4PQ13434 485 aaPredicted RBP8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 CBWD6Q4V339 395 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 CBWD3Q5JTY5 395 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 CBWD5Q5RIA9 395 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 C6orf89Q6UWU4 347 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 NCAPGQ9BPX3 1015 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 ERP44Q9BS26 406 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 STK33Q9BYT3 514 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 HAUS2Q9NVX0 235 aa8.16□□□□□ -1.1
SMARCC1-202ENST00000425518 PLIN4Q96Q06 1357 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 A0A0A6YYK5 440 aaPredicted RBP8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 EXOC3O60645 756 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 MAP2K2P36507 400 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 SMTNP53814 917 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 ICA1Q05084 483 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 DCAF12L1Q5VU92 463 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 KIAA0825Q8IV33 1275 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 LENG9Q96B70 501 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 HOOK2Q96ED9 719 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 DYDC2Q96IM9 177 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 CCDC17Q96LX7 622 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 FAM20AQ96MK3 541 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 SCLT1Q96NL6 688 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 FRMD4BQ9Y2L6 1034 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 FOXN3O00409 490 aaPredicted RBP8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 SLC16A3O15427 465 aaKnown RBP8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 DDX3YO15523 660 aaKnown RBP8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 EYA4O95677 639 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 CFBP00751 764 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 ZNF746Q6NUN9 644 aaPredicted RBP8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 CCDC25Q86WR0 208 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 FAM178BQ8IXR5 827 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 FBXO25Q8TCJ0 367 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 ALG3Q92685 438 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 TEKT1Q969V4 418 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 C18orf8Q96DM3 657 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 PAGR1Q9BTK6 254 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 INTS2Q9H0H0 1204 aaKnown RBP8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 PCIF1Q9H4Z3 704 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 INTUQ9ULD6 942 aa8.15□□□□□ -1.1
SMARCC1-202ENST00000425518 MYO3BQ8WXR4 1341 aa8.15□□□□□ -1.11
SMARCC1-202ENST00000425518 ATXN2Q99700 1313 aaKnown RBP8.15□□□□□ -1.11
SMARCC1-202ENST00000425518 DDTLA6NHG4 134 aaPredicted RBP8.15□□□□□ -1.11
SMARCC1-202ENST00000425518 TMEM253P0C7T8 217 aa8.15□□□□□ -1.11
SMARCC1-202ENST00000425518 IFNAR2P48551 515 aa8.15□□□□□ -1.11
SMARCC1-202ENST00000425518 PMS2P54278 862 aa8.15□□□□□ -1.11
SMARCC1-202ENST00000425518 NPEPPSP55786 919 aa8.15□□□□□ -1.11
SMARCC1-202ENST00000425518 SLC29A2Q14542 456 aa8.15□□□□□ -1.11
SMARCC1-202ENST00000425518 ODR4Q5SWX8 454 aa8.15□□□□□ -1.11
SMARCC1-202ENST00000425518 DENND2CQ68D51 928 aa8.15□□□□□ -1.11
SMARCC1-202ENST00000425518 APOBEC3HQ6NTF7 200 aaKnown RBP8.15□□□□□ -1.11
SMARCC1-202ENST00000425518 SLC30A5Q8TAD4 765 aa8.15□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms