RNA–Protein interactions for RNA: ENST00000412148.5

CCDC88A-203, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 2,880 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-203ENST00000412148 ENPEPQ07075 957 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 KLRC3Q07444 240 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 C6orf118Q5T5N4 469 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 CYB5D1Q6P9G0 228 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 NBPF5PQ86XG9 351 aaPredicted RBP6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 PARP9Q8IXQ6 854 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 TEX11Q8IYF3 940 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 ADGRF4Q8IZF3 695 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 ZNF526Q8TF50 670 aaPredicted RBP6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 ATXN2LQ8WWM7 1075 aaKnown RBP6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 EEF2KMTQ96G04 330 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 SPAG5Q96R06 1193 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 PSMB7Q99436 277 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 FMO2Q99518 471 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 PLCD4Q9BRC7 762 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 NEUROG2Q9H2A3 272 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 CXorf56Q9H5V9 222 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 CD209Q9NNX6 404 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 DMAC2Q9NW81 257 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 RASAL2Q9UJF2 1139 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 GOLGA6L10A0A0M3HER8 536 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 ANKRD62A6NC57 917 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 PIK3CDO00329 1044 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 TCEA3O75764 348 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 OAS1P00973 400 aaKnown RBP6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 CHRM1P11229 460 aaPredicted RBP6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 SCTRP47872 440 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 ZNF131P52739 623 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 SEC24CP53992 1094 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 SLC8A3P57103 927 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 HLTFQ14527 1009 aaKnown RBP eCLIP6.23□□□□□ -1.413e-6■□□□□ 9.9
CCDC88A-203ENST00000412148 LRRC41Q15345 812 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 HERC4Q5GLZ8 1057 aaPredicted RBP6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 CYFIP1Q7L576 1253 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 GBP7Q8N8V2 638 aaPredicted RBP6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 ANKS4BQ8N8V4 417 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 MRIQ9BWK5 157 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 PSTPIP2Q9H939 334 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 TUFT1Q9NNX1 390 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 PCDHA3Q9Y5H8 950 aa6.23□□□□□ -1.41
CCDC88A-203ENST00000412148 CCT8L1PA6NM43 557 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 F8W031 263 aaPredicted RBP6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 O00370 1275 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 DNM1LO00429 736 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 EYA4O95677 639 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 NR3C1P04150 777 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 SPATA31C1P0DKV0 1188 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 MAPTP10636 758 aaKnown RBP6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 VCAM1P19320 739 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 RDXP35241 583 aaKnown RBP6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 PDE6BP35913 854 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 SREBF1P36956 1147 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 SNRPFP62306 86 aaKnown RBP6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 IFT88Q13099 833 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 MAPK7Q13164 816 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 MAPKAPK5Q8IW41 473 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 KLHL7Q8IXQ5 586 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 C12orf56Q8IXR9 622 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 MAB21L3Q8N8X9 362 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 NEK9Q8TD19 979 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 LENG9Q96B70 501 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 STRA6Q9BX79 667 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 FGFBP2Q9BYJ0 223 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 ADAM7Q9H2U9 754 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 CNOT8Q9UFF9 292 aaKnown RBP6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 KIAA1024Q9UPX6 916 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 AFF2P51816 1311 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 ARID2Q68CP9 1835 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 SIP14410 1827 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 ZMYM2Q9UBW7 1377 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 ZNF335Q9H4Z2 1342 aaPredicted RBP6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 E9PMD0 336 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 KIAA0391O15091 583 aaKnown RBP6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 DAPK3O43293 454 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 PPP1R12BO60237 982 aaPredicted RBP6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 PHF2O75151 1096 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 MED24O75448 989 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 SLC9A1P19634 815 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 HOXA10P31260 410 aaPredicted RBP6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 PSMC2P35998 433 aaKnown RBP6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 PTGIRP43119 386 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 GALCP54803 685 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 DHX9Q08211 1270 aaKnown RBP6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 TRAF1Q13077 416 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 DIXDC1Q155Q3 683 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 TRADDQ15628 312 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 SPDYAQ5MJ70 313 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 TLDC1Q6P9B6 456 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 CCDC197Q8NCU1 140 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 LNX1Q8TBB1 728 aaPredicted RBP6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 COA7Q96BR5 231 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 HOOK2Q96ED9 719 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 ANO3Q9BYT9 981 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 DDX47Q9H0S4 455 aaKnown RBP6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 EBF2Q9HAK2 575 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 NYAP2Q9P242 653 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 DNM3Q9UQ16 869 aa6.22□□□□□ -1.41
CCDC88A-203ENST00000412148 KLRG2A4D1S0 409 aaPredicted RBP6.21□□□□□ -1.41
CCDC88A-203ENST00000412148 AKAP3O75969 853 aa6.21□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms