RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 PGAP2Q9UHJ9 254 aa23.74■■□□□ 1.39
SHMT1-202ENST00000352886 H2AFZP0C0S5 128 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 SOX5P35711 763 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 NBPF9Q3BBW0 867 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 PADI6Q6TGC4 694 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.73■■□□□ 1.39
SHMT1-202ENST00000352886 H2AFVQ71UI9 128 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 IFT20Q8IY31 132 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 USP38Q8NB14 1042 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 NEK9Q8TD19 979 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 U2AF1L4Q8WU68 220 aaKnown RBP23.73■■□□□ 1.39
SHMT1-202ENST00000352886 DNAJC12Q9UKB3 198 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 RPTORQ8N122 1335 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 ZSCAN5CA6NGD5 496 aaPredicted RBP23.73■■□□□ 1.39
SHMT1-202ENST00000352886 BCRP11274 1271 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 MUM1L1Q5H9M0 696 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 LEKR1Q6ZMV7 388 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 AGBL3Q8NEM8 1001 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 TPCN2Q8NHX9 752 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 STRA6Q9BX79 667 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 STK33Q9BYT3 514 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 EPB41L5Q9HCM4 733 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 GDF3Q9NR23 364 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 TMEM51Q9NW97 253 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 ZNRF3Q9ULT6 936 aa23.73■■□□□ 1.39
SHMT1-202ENST00000352886 ATP8B3O60423 1300 aa23.72■■□□□ 1.39
SHMT1-202ENST00000352886 K7ENM7 598 aa23.72■■□□□ 1.39
SHMT1-202ENST00000352886 WNT10BO00744 389 aa23.72■■□□□ 1.39
SHMT1-202ENST00000352886 CES2O00748 559 aa23.72■■□□□ 1.39
SHMT1-202ENST00000352886 EXOC3O60645 756 aa23.72■■□□□ 1.39
SHMT1-202ENST00000352886 PPP1R37O75864 691 aa23.72■■□□□ 1.39
SHMT1-202ENST00000352886 GUCY2DQ02846 1103 aa23.72■■□□□ 1.39
SHMT1-202ENST00000352886 DRAP1Q14919 205 aaPredicted RBP23.72■■□□□ 1.39
SHMT1-202ENST00000352886 PPP2R5AQ15172 486 aa23.72■■□□□ 1.39
SHMT1-202ENST00000352886 RDH13Q8NBN7 331 aa23.72■■□□□ 1.39
SHMT1-202ENST00000352886 CAVIN3Q969G5 261 aa23.72■■□□□ 1.39
SHMT1-202ENST00000352886 ESYT3A0FGR9 886 aa23.72■■□□□ 1.39
SHMT1-202ENST00000352886 CARSP49589 748 aaKnown RBP23.72■■□□□ 1.39
SHMT1-202ENST00000352886 NIM1KQ8IY84 436 aa23.72■■□□□ 1.39
SHMT1-202ENST00000352886 CPXCR1Q8N123 301 aa23.72■■□□□ 1.39
SHMT1-202ENST00000352886 TSEN2Q8NCE0 465 aaKnown RBP23.72■■□□□ 1.39
SHMT1-202ENST00000352886 LNX1Q8TBB1 728 aaPredicted RBP23.72■■□□□ 1.39
SHMT1-202ENST00000352886 CLEC4DQ8WXI8 215 aa23.72■■□□□ 1.39
SHMT1-202ENST00000352886 BFSP1Q12934 665 aa23.71■■□□□ 1.39
SHMT1-202ENST00000352886 PRPF38AQ8NAV1 312 aaKnown RBP23.71■■□□□ 1.39
SHMT1-202ENST00000352886 INTS2Q9H0H0 1204 aaKnown RBP23.71■■□□□ 1.39
SHMT1-202ENST00000352886 DHX15O43143 795 aaKnown RBP23.71■■□□□ 1.39
SHMT1-202ENST00000352886 P4HBP07237 508 aaKnown RBP23.71■■□□□ 1.39
SHMT1-202ENST00000352886 MYL7Q01449 175 aa23.71■■□□□ 1.39
SHMT1-202ENST00000352886 MAP3K10Q02779 954 aa23.71■■□□□ 1.39
SHMT1-202ENST00000352886 TNIP1Q15025 636 aa23.71■■□□□ 1.39
SHMT1-202ENST00000352886 CAMKK2Q96RR4 588 aa23.71■■□□□ 1.39
SHMT1-202ENST00000352886 INTUQ9ULD6 942 aa23.71■■□□□ 1.39
SHMT1-202ENST00000352886 NFU1Q9UMS0 254 aa23.71■■□□□ 1.39
SHMT1-202ENST00000352886 SAMM50Q9Y512 469 aa23.71■■□□□ 1.39
SHMT1-202ENST00000352886 ZHX2Q9Y6X8 837 aa23.71■■□□□ 1.39
SHMT1-202ENST00000352886 A0A0A6YYK5 440 aaPredicted RBP23.7■■□□□ 1.38
SHMT1-202ENST00000352886 DPEP1P16444 411 aa23.7■■□□□ 1.38
SHMT1-202ENST00000352886 KCNA3P22001 575 aa23.7■■□□□ 1.38
SHMT1-202ENST00000352886 SLC9A9Q8IVB4 645 aa23.7■■□□□ 1.38
SHMT1-202ENST00000352886 GLYCTKQ8IVS8 523 aa23.7■■□□□ 1.38
SHMT1-202ENST00000352886 SLC30A5Q8TAD4 765 aa23.7■■□□□ 1.38
SHMT1-202ENST00000352886 OLIG1Q8TAK6 271 aa23.7■■□□□ 1.38
SHMT1-202ENST00000352886 IFT81Q8WYA0 676 aa23.7■■□□□ 1.38
SHMT1-202ENST00000352886 PBKQ96KB5 322 aa23.7■■□□□ 1.38
SHMT1-202ENST00000352886 GPR88Q9GZN0 384 aa23.7■■□□□ 1.38
SHMT1-202ENST00000352886 HOMER2Q9NSB8 354 aa23.7■■□□□ 1.38
SHMT1-202ENST00000352886 APEX2Q9UBZ4 518 aa23.7■■□□□ 1.38
SHMT1-202ENST00000352886 ALAS1P13196 640 aa23.7■■□□□ 1.38
SHMT1-202ENST00000352886 TNNC1P63316 161 aa23.7■■□□□ 1.38
SHMT1-202ENST00000352886 ITGB3BPQ13352 177 aaPredicted RBP23.7■■□□□ 1.38
SHMT1-202ENST00000352886 TKFCQ3LXA3 575 aa23.7■■□□□ 1.38
SHMT1-202ENST00000352886 KLHL7Q8IXQ5 586 aa23.7■■□□□ 1.38
SHMT1-202ENST00000352886 LARSQ9P2J5 1176 aaKnown RBP23.7■■□□□ 1.38
SHMT1-202ENST00000352886 TMEM59LQ9UK28 342 aa23.7■■□□□ 1.38
SHMT1-202ENST00000352886 TMCO5BA8MYB1 307 aa23.69■■□□□ 1.38
SHMT1-202ENST00000352886 CEP104O60308 925 aa23.69■■□□□ 1.38
SHMT1-202ENST00000352886 GALCP54803 685 aa23.69■■□□□ 1.38
SHMT1-202ENST00000352886 DGKZQ13574 1117 aa23.69■■□□□ 1.38
SHMT1-202ENST00000352886 PEX26Q7Z412 305 aa23.69■■□□□ 1.38
SHMT1-202ENST00000352886 MCF2L2Q86YR7 1114 aa23.69■■□□□ 1.38
SHMT1-202ENST00000352886 LMBR1Q8WVP7 490 aa23.69■■□□□ 1.38
SHMT1-202ENST00000352886 ZBED3Q96IU2 234 aaPredicted RBP23.69■■□□□ 1.38
SHMT1-202ENST00000352886 AGO4Q9HCK5 861 aaKnown RBP23.69■■□□□ 1.38
SHMT1-202ENST00000352886 PHF20L1A8MW92 1017 aa23.69■■□□□ 1.38
SHMT1-202ENST00000352886 CXCL9Q07325 125 aa23.69■■□□□ 1.38
SHMT1-202ENST00000352886 PAK2Q13177 524 aa23.69■■□□□ 1.38
SHMT1-202ENST00000352886 FER1L6Q2WGJ9 1857 aa23.69■■□□□ 1.38
SHMT1-202ENST00000352886 NIPA1Q7RTP0 329 aa23.69■■□□□ 1.38
SHMT1-202ENST00000352886 GOLGA6CA6NDK9 693 aa23.68■■□□□ 1.38
SHMT1-202ENST00000352886 WDR46O15213 610 aaKnown RBP23.68■■□□□ 1.38
SHMT1-202ENST00000352886 RAD51CO43502 376 aa23.68■■□□□ 1.38
SHMT1-202ENST00000352886 GOLGA6DP0CG33 693 aa23.68■■□□□ 1.38
SHMT1-202ENST00000352886 LMNB1P20700 586 aa23.68■■□□□ 1.38
SHMT1-202ENST00000352886 RARRES1P49788 294 aa23.68■■□□□ 1.38
SHMT1-202ENST00000352886 MRPS9P82933 396 aaKnown RBP23.68■■□□□ 1.38
SHMT1-202ENST00000352886 NNTQ13423 1086 aa23.68■■□□□ 1.38
SHMT1-202ENST00000352886 SLFN11Q7Z7L1 901 aa23.68■■□□□ 1.38
SHMT1-202ENST00000352886 DAAM2Q86T65 1068 aa23.68■■□□□ 1.38
SHMT1-202ENST00000352886 METTL13Q8N6R0 699 aa23.68■■□□□ 1.38
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms