RNA–Protein interactions for RNA: ENST00000323701.10

USP39-201, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,177 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-201ENST00000323701 CCDC169A6NNP5 214 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 DKC1O60832 514 aaKnown RBP eCLIP20.22■□□□□ 0.83
USP39-201ENST00000323701 TXNP10599 105 aaKnown RBP20.22■□□□□ 0.83
USP39-201ENST00000323701 CYP2J2P51589 502 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 TRIM14Q14142 442 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 FAM110CQ1W6H9 321 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 DNTTIP2Q5QJE6 756 aaKnown RBP20.22■□□□□ 0.83
USP39-201ENST00000323701 TAPT1Q6NXT6 567 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 ATRIPQ8WXE1 791 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 SEPT1Q8WYJ6 367 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 DNAJC7Q99615 494 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 TIPINQ9BVW5 301 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 ARMCX3Q9UH62 379 aaPredicted RBP20.22■□□□□ 0.83
USP39-201ENST00000323701 LUC7L2Q9Y383 392 aaKnown RBP20.22■□□□□ 0.83
USP39-201ENST00000323701 DGAT1O75907 488 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 MAPTP10636 758 aaKnown RBP20.22■□□□□ 0.83
USP39-201ENST00000323701 STAT5BP51692 787 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 KCNH2Q12809 1159 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 MAMDC4Q6UXC1 1216 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 NYAP1Q6ZVC0 841 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 FRMD5Q7Z6J6 570 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 GPIHBP1Q8IV16 184 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 TMEM143Q96AN5 459 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 MPHOSPH6Q99547 160 aaKnown RBP20.22■□□□□ 0.83
USP39-201ENST00000323701 KATNBL1Q9H079 304 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 MMRN2Q9H8L6 949 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 PASKQ96RG2 1323 aa20.22■□□□□ 0.83
USP39-201ENST00000323701 ASB14A6NK59 587 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 SNAI1O95863 264 aaPredicted RBP20.21■□□□□ 0.83
USP39-201ENST00000323701 MARK3P27448 753 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 GRB14Q14449 540 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 REXO1L1PQ8IX06 675 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 SYCP3Q8IZU3 236 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 CBWD1Q9BRT8 395 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 IVNS1ABPQ9Y6Y0 642 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 ADGRA2Q96PE1 1338 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 STRNO43815 780 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 NRDCO43847 1150 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 NOL4O94818 638 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 TPM1P09493 284 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 RPL13P26373 211 aaKnown RBP20.21■□□□□ 0.83
USP39-201ENST00000323701 EMC2Q15006 297 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 NFIL3Q16649 462 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 STXBP4Q6ZWJ1 553 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 DHX37Q8IY37 1157 aaKnown RBP20.21■□□□□ 0.83
USP39-201ENST00000323701 ABRAQ8N0Z2 381 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 AFAP1L1Q8TED9 768 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 SLC35C1Q96A29 364 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 SPATA33Q96N06 139 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 ST6GALNAC4Q9H4F1 302 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 PCIF1Q9H4Z3 704 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 ATP6V0A4Q9HBG4 840 aa20.21■□□□□ 0.83
USP39-201ENST00000323701 TARBP2Q15633 366 aaKnown RBP20.2■□□□□ 0.82
USP39-201ENST00000323701 RGMBQ6NW40 437 aa20.2■□□□□ 0.82
USP39-201ENST00000323701 HS2ST1Q7LGA3 356 aa20.2■□□□□ 0.82
USP39-201ENST00000323701 OR8K1Q8NGG5 319 aa20.2■□□□□ 0.82
USP39-201ENST00000323701 CCDC51Q96ER9 411 aa20.2■□□□□ 0.82
USP39-201ENST00000323701 ZIC5Q96T25 663 aa20.2■□□□□ 0.82
USP39-201ENST00000323701 NIFKQ9BYG3 293 aaKnown RBP20.2■□□□□ 0.82
USP39-201ENST00000323701 POLR3FQ9H1D9 316 aaPredicted RBP20.2■□□□□ 0.82
USP39-201ENST00000323701 DHX33Q9H6R0 707 aaKnown RBP20.2■□□□□ 0.82
USP39-201ENST00000323701 PPP2R2CQ9Y2T4 447 aa20.2■□□□□ 0.82
USP39-201ENST00000323701 DNAH12Q6ZR08 3092 aa20.2■□□□□ 0.82
USP39-201ENST00000323701 ANKRD63C9JTQ0 380 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 DMP1Q13316 513 aaPredicted RBP20.19■□□□□ 0.82
USP39-201ENST00000323701 DRP2Q13474 957 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 DCAF17Q5H9S7 520 aaPredicted RBP20.19■□□□□ 0.82
USP39-201ENST00000323701 TAS1R3Q7RTX0 852 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 RDH13Q8NBN7 331 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 NPLOC4Q8TAT6 608 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 KIFAP3Q92845 792 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 NTPCRQ9BSD7 190 aaKnown RBP20.19■□□□□ 0.82
USP39-201ENST00000323701 TBX20Q9UMR3 447 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 USP20Q9Y2K6 914 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 C11orf97A0A1B0GVM6 126 aaPredicted RBP20.19■□□□□ 0.82
USP39-201ENST00000323701 DENND3A2RUS2 1198 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 SLC16A3O15427 465 aaKnown RBP20.19■□□□□ 0.82
USP39-201ENST00000323701 POLGP54098 1239 aaPredicted RBP20.19■□□□□ 0.82
USP39-201ENST00000323701 FIGNQ5HY92 759 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 KCNV1Q6PIU1 500 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 PLEKHH3Q7Z736 793 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 DPP9Q86TI2 863 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 FAM186BQ8IYM0 893 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 MCPH1Q8NEM0 835 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 ASAP3Q8TDY4 903 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 MAML3Q96JK9 1138 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 ACCSQ96QU6 501 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 KMT5AQ9NQR1 393 aa20.19■□□□□ 0.82
USP39-201ENST00000323701 CDKN2AIPQ9NXV6 580 aaPredicted RBP20.19■□□□□ 0.82
USP39-201ENST00000323701 DIS3Q9Y2L1 958 aaKnown RBP20.19■□□□□ 0.82
USP39-201ENST00000323701 FAM155AB1AL88 458 aaPredicted RBP20.18■□□□□ 0.82
USP39-201ENST00000323701 ZBTB42B2RXF5 422 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 NOP56O00567 594 aaKnown RBP20.18■□□□□ 0.82
USP39-201ENST00000323701 EPB41P11171 864 aaKnown RBP20.18■□□□□ 0.82
USP39-201ENST00000323701 TNNT1P13805 278 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 ADSSP30520 456 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 ADCYAP1R1P41586 468 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 ARHGAP1Q07960 439 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 TTLL4Q14679 1199 aa20.18■□□□□ 0.82
USP39-201ENST00000323701 DPY19L2P1Q6NXN4 242 aa20.18■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms