RNA–Protein interactions for RNA: ENST00000304636.7

COL3A1-201, Transcript of collagen type III alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL3A1, Length 5,543 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1-201ENST00000304636 DRAP1Q14919 205 aaPredicted RBP13.75□□□□□ -0.21
COL3A1-201ENST00000304636 FUT8Q9BYC5 575 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 UPF3AQ9H1J1 476 aaKnown RBP13.75□□□□□ -0.21
COL3A1-201ENST00000304636 MRPL46Q9H2W6 279 aaKnown RBP13.75□□□□□ -0.21
COL3A1-201ENST00000304636 ADAM22Q9P0K1 906 aa13.75□□□□□ -0.21
COL3A1-201ENST00000304636 GSG1L2A8MUP6 293 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 FOXP2O15409 715 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 STAT2P52630 851 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 ITKQ08881 620 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 SLC18A3Q16572 532 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 TBC1D10BQ4KMP7 808 aaPredicted RBP13.74□□□□□ -0.21
COL3A1-201ENST00000304636 NUP85Q9BW27 656 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 SFI1A8K8P3 1242 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 PPIP5K2O43314 1243 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 SORBS3O60504 671 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 FCER1AP12319 257 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 GUCY1A2P33402 732 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 CCNYQ8ND76 341 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 PRMT1Q99873 361 aaKnown RBP13.74□□□□□ -0.21
COL3A1-201ENST00000304636 HEMGNQ9BXL5 484 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 CDHR2Q9BYE9 1310 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 ZNF233A6NK53 670 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 GYPCP04921 128 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 IRX1P78414 480 aaPredicted RBP13.74□□□□□ -0.21
COL3A1-201ENST00000304636 PDCD2Q16342 344 aaPredicted RBP13.74□□□□□ -0.21
COL3A1-201ENST00000304636 FAF2Q96CS3 445 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 SEC16BQ96JE7 1060 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 RNPC3Q96LT9 517 aaKnown RBP13.74□□□□□ -0.21
COL3A1-201ENST00000304636 CCSER1Q9C0I3 900 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 KLC2Q9H0B6 622 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 NDE1Q9NXR1 346 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 WDR17Q8IZU2 1322 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 QRICH2Q9H0J4 1663 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 GOLGA8IPA6NC78 632 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 GOLGA8JA6NMD2 632 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 FAM98CQ17RN3 349 aaKnown RBP13.74□□□□□ -0.21
COL3A1-201ENST00000304636 MIS18BP1Q6P0N0 1132 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 RBM43Q6ZSC3 357 aaKnown RBP13.74□□□□□ -0.21
COL3A1-201ENST00000304636 FRMD5Q7Z6J6 570 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 ERICH1Q86X53 443 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 TRIM59Q8IWR1 403 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 FGD4Q96M96 766 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 NACA2Q9H009 215 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 SLAIN2Q9P270 581 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 ORC6Q9Y5N6 252 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 TLR3O15455 904 aaKnown RBP13.74□□□□□ -0.21
COL3A1-201ENST00000304636 FTLP02792 175 aaPredicted RBP13.74□□□□□ -0.21
COL3A1-201ENST00000304636 HSPA8P11142 646 aaKnown RBP13.74□□□□□ -0.21
COL3A1-201ENST00000304636 NOA1Q8NC60 698 aaKnown RBP13.74□□□□□ -0.21
COL3A1-201ENST00000304636 MS4A14Q96JA4 679 aa13.74□□□□□ -0.21
COL3A1-201ENST00000304636 INTS2Q9H0H0 1204 aaKnown RBP13.74□□□□□ -0.21
COL3A1-201ENST00000304636 ZBTB5O15062 677 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 CHN1P15882 459 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 SURF1Q15526 300 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 SPOPLQ6IQ16 392 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 XXYLT1Q8NBI6 393 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 IL17RAQ96F46 866 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 TRIM10Q9UDY6 481 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 DCTN4Q9UJW0 460 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 IQSEC2Q5JU85 1478 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 HSPA4LO95757 839 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 FAM107AO95990 144 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 STAT4Q14765 748 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 HIPK4Q8NE63 616 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 CEP70Q8NHQ1 597 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 FUCA2Q9BTY2 467 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 PHF20Q9BVI0 1012 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 SENP1Q9P0U3 644 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 SYNJ2BP-COX16A0A087WUM0 186 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 A0A1W2PQJ5 194 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 GOLGA8CPA6NN73 597 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 M0QZ92 97 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 GNGT2O14610 69 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 RHOBTB3O94955 611 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 PSMA2P25787 234 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 SOX5P35711 763 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 RABL6Q3YEC7 729 aaPredicted RBP13.73□□□□□ -0.21
COL3A1-201ENST00000304636 KIAA1755Q5JYT7 1200 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 TMC4Q7Z404 712 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 FAM20AQ96MK3 541 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 XPO6Q96QU8 1125 aaKnown RBP13.73□□□□□ -0.21
COL3A1-201ENST00000304636 TRIM15Q9C019 465 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 COX16Q9P0S2 106 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 MROH7-TTC4A0A0A0MT08 1334 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 PNPLA7Q6ZV29 1317 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 CRB1P82279 1406 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 TCP11X1B4DZS4 312 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 STXBP3O00186 592 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 EEF1B2P24534 225 aaKnown RBP13.73□□□□□ -0.21
COL3A1-201ENST00000304636 MCUQ8NE86 351 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 CYFIP2Q96F07 1278 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 STAMBPL1Q96FJ0 436 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 FAM161BQ96MY7 647 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 ZIM3Q96PE6 472 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 TRIM9Q9C026 710 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 SLC38A10Q9HBR0 1119 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 RBM12Q9NTZ6 932 aaKnown RBP13.73□□□□□ -0.21
COL3A1-201ENST00000304636 SPHKAPQ2M3C7 1700 aa13.73□□□□□ -0.21
COL3A1-201ENST00000304636 CYP2D6P10635 497 aa13.72□□□□□ -0.21
COL3A1-201ENST00000304636 TFAMQ00059 246 aaKnown RBP13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms