RNA–Protein interactions for RNA: ENST00000272322.8

VPS54-201, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS P3 TSL 5 BASIC

Gene VPS54, Length 3,463 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-201ENST00000272322 KIF4AO95239 1232 aa18.1■□□□□ 0.49
VPS54-201ENST00000272322 ZNF662Q6ZS27 426 aa18.1■□□□□ 0.49
VPS54-201ENST00000272322 CPNE8Q86YQ8 564 aa18.1■□□□□ 0.49
VPS54-201ENST00000272322 IFT20Q8IY31 132 aa18.1■□□□□ 0.49
VPS54-201ENST00000272322 RNF10Q8N5U6 811 aaKnown RBP18.1■□□□□ 0.49
VPS54-201ENST00000272322 AGPAT3Q9NRZ7 376 aa18.1■□□□□ 0.49
VPS54-201ENST00000272322 CTDP1Q9Y5B0 961 aaPredicted RBP18.1■□□□□ 0.49
VPS54-201ENST00000272322 ASTN2O75129 1339 aaPredicted RBP18.1■□□□□ 0.49
VPS54-201ENST00000272322 FRMD3A2A2Y4 597 aa18.1■□□□□ 0.49
VPS54-201ENST00000272322 PEX10O60683 326 aa18.1■□□□□ 0.49
VPS54-201ENST00000272322 FMO5P49326 533 aa18.1■□□□□ 0.49
VPS54-201ENST00000272322 PEX3P56589 373 aa18.1■□□□□ 0.49
VPS54-201ENST00000272322 CEP85LQ5SZL2 805 aa18.1■□□□□ 0.49
VPS54-201ENST00000272322 VPS36Q86VN1 386 aa18.1■□□□□ 0.49
VPS54-201ENST00000272322 ARHGEF26Q96DR7 871 aa18.1■□□□□ 0.49
VPS54-201ENST00000272322 BTBD6Q96KE9 485 aa18.1■□□□□ 0.49
VPS54-201ENST00000272322 NUCKS1Q9H1E3 243 aaKnown RBP18.1■□□□□ 0.49
VPS54-201ENST00000272322 SIX2Q9NPC8 291 aa18.1■□□□□ 0.49
VPS54-201ENST00000272322 FLT3P36888 993 aa18.1■□□□□ 0.49
VPS54-201ENST00000272322 ZNF720Q7Z2F6 126 aa18.1■□□□□ 0.49
VPS54-201ENST00000272322 TRIM51Q9BSJ1 452 aa18.1■□□□□ 0.49
VPS54-201ENST00000272322 TELO2Q9Y4R8 837 aa18.1■□□□□ 0.49
VPS54-201ENST00000272322 SART1O43290 800 aaKnown RBP18.09■□□□□ 0.49
VPS54-201ENST00000272322 DAPK3O43293 454 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 BUB1BO60566 1050 aaPredicted RBP18.09■□□□□ 0.49
VPS54-201ENST00000272322 FGGP02679 453 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 EPHB4P54760 987 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 GUCY1A3Q02108 690 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 TTMPQ5BVD1 217 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 LMBRD2Q68DH5 695 aaPredicted RBP18.09■□□□□ 0.49
VPS54-201ENST00000272322 LNX1Q8TBB1 728 aaPredicted RBP18.09■□□□□ 0.49
VPS54-201ENST00000272322 BCAS4Q8TDM0 211 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 UBLCP1Q8WVY7 318 aaPredicted RBP18.09■□□□□ 0.49
VPS54-201ENST00000272322 IQCDQ96DY2 449 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 THAP2Q9H0W7 228 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 PPP1R9AQ9ULJ8 1098 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 RRP15Q9Y3B9 282 aaKnown RBP18.09■□□□□ 0.49
VPS54-201ENST00000272322 NHSQ6T4R5 1651 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 MYO1CO00159 1063 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 TTI1O43156 1089 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 TNFAIP3P21580 790 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 NNTQ13423 1086 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 FAM102BQ5T8I3 360 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 EPM2AIP1Q7L775 607 aaPredicted RBP18.09■□□□□ 0.49
VPS54-201ENST00000272322 SLC35G2Q8TBE7 412 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 CHURC1Q8WUH1 139 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 TMX2Q9Y320 296 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 NOC2LQ9Y3T9 749 aaKnown RBP18.09■□□□□ 0.49
VPS54-201ENST00000272322 EMSYQ7Z589 1322 aa18.09■□□□□ 0.49
VPS54-201ENST00000272322 MUM1L1Q5H9M0 696 aa18.08■□□□□ 0.49
VPS54-201ENST00000272322 PPM1KQ8N3J5 372 aa18.08■□□□□ 0.49
VPS54-201ENST00000272322 GLG1Q92896 1179 aa18.08■□□□□ 0.49
VPS54-201ENST00000272322 MBOAT7Q96N66 472 aa18.08■□□□□ 0.49
VPS54-201ENST00000272322 TEKT3Q9BXF9 490 aa18.08■□□□□ 0.49
VPS54-201ENST00000272322 CYP3A4P08684 503 aa18.08■□□□□ 0.49
VPS54-201ENST00000272322 ERVK-9P63128 1117 aa18.08■□□□□ 0.49
VPS54-201ENST00000272322 MAP2K1Q02750 393 aaPredicted RBP18.08■□□□□ 0.49
VPS54-201ENST00000272322 PHLDB3Q6NSJ2 640 aa18.08■□□□□ 0.49
VPS54-201ENST00000272322 PPP4R3CPQ6ZMV5 832 aa18.08■□□□□ 0.49
VPS54-201ENST00000272322 USP38Q8NB14 1042 aa18.08■□□□□ 0.49
VPS54-201ENST00000272322 TPCN2Q8NHX9 752 aa18.08■□□□□ 0.49
VPS54-201ENST00000272322 INPP4AQ96PE3 977 aaPredicted RBP18.08■□□□□ 0.49
VPS54-201ENST00000272322 PLCB1Q9NQ66 1216 aa18.08■□□□□ 0.49
VPS54-201ENST00000272322 CWC15Q9P013 229 aaKnown RBP18.08■□□□□ 0.49
VPS54-201ENST00000272322 ATP9AO75110 1047 aa18.08■□□□□ 0.48
VPS54-201ENST00000272322 MYL7Q01449 175 aa18.08■□□□□ 0.48
VPS54-201ENST00000272322 NACC1Q96RE7 527 aa18.08■□□□□ 0.48
VPS54-201ENST00000272322 VCPKMTQ9H867 229 aa18.08■□□□□ 0.48
VPS54-201ENST00000272322 TBX3O15119 743 aa18.07■□□□□ 0.48
VPS54-201ENST00000272322 KRT13P13646 458 aa18.07■□□□□ 0.48
VPS54-201ENST00000272322 RSBN1LQ6PCB5 846 aaPredicted RBP18.07■□□□□ 0.48
VPS54-201ENST00000272322 TAAR1Q96RJ0 339 aa18.07■□□□□ 0.48
VPS54-201ENST00000272322 EDEM3Q9BZQ6 932 aa18.07■□□□□ 0.48
VPS54-201ENST00000272322 NEUROG2Q9H2A3 272 aa18.07■□□□□ 0.48
VPS54-201ENST00000272322 MRPL11Q9Y3B7 192 aaKnown RBP18.07■□□□□ 0.48
VPS54-201ENST00000272322 ENTPD3O75355 529 aa18.07■□□□□ 0.48
VPS54-201ENST00000272322 DLATP10515 647 aaKnown RBP18.07■□□□□ 0.48
VPS54-201ENST00000272322 ODF2Q5BJF6 829 aa18.07■□□□□ 0.48
VPS54-201ENST00000272322 DEFB132Q7Z7B7 95 aa18.07■□□□□ 0.48
VPS54-201ENST00000272322 DAW1Q8N136 415 aa18.07■□□□□ 0.48
VPS54-201ENST00000272322 CTNNBL1Q8WYA6 563 aaPredicted RBP18.07■□□□□ 0.48
VPS54-201ENST00000272322 WNK4Q96J92 1243 aa18.07■□□□□ 0.48
VPS54-201ENST00000272322 INTS2Q9H0H0 1204 aaKnown RBP18.07■□□□□ 0.48
VPS54-201ENST00000272322 METTL14Q9HCE5 456 aaKnown RBP18.07■□□□□ 0.48
VPS54-201ENST00000272322 TOPORSQ9NS56 1045 aaPredicted RBP18.07■□□□□ 0.48
VPS54-201ENST00000272322 CTTNBP2NLQ9P2B4 639 aa18.07■□□□□ 0.48
VPS54-201ENST00000272322 PCDHGC5Q9Y5F6 944 aa18.07■□□□□ 0.48
VPS54-201ENST00000272322 ZHX2Q9Y6X8 837 aa18.07■□□□□ 0.48
VPS54-201ENST00000272322 RASA3Q14644 834 aa18.07■□□□□ 0.48
VPS54-201ENST00000272322 POLR3CQ9BUI4 534 aaPredicted RBP18.07■□□□□ 0.48
VPS54-201ENST00000272322 CAPS2Q9BXY5 557 aa18.07■□□□□ 0.48
VPS54-201ENST00000272322 GJA3Q9Y6H8 435 aa18.07■□□□□ 0.48
VPS54-201ENST00000272322 UBR3Q6ZT12 1888 aa18.07■□□□□ 0.48
VPS54-201ENST00000272322 ZMYM2Q9UBW7 1377 aa18.07■□□□□ 0.48
VPS54-201ENST00000272322 CIITAP33076 1130 aa18.06■□□□□ 0.48
VPS54-201ENST00000272322 PPP3CAQ08209 521 aa18.06■□□□□ 0.48
VPS54-201ENST00000272322 MESDQ14696 234 aa18.06■□□□□ 0.48
VPS54-201ENST00000272322 UGCGQ16739 394 aa18.06■□□□□ 0.48
VPS54-201ENST00000272322 SAMD7Q7Z3H4 446 aa18.06■□□□□ 0.48
VPS54-201ENST00000272322 TLDC2A0PJX2 215 aa18.06■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms