RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 MCM6Q14566 821 aa14.19□□□□□ -0.14
SS18-202ENST00000269138 LPIN1Q14693 890 aa14.19□□□□□ -0.14
SS18-202ENST00000269138 FBXO47Q5MNV8 452 aa14.19□□□□□ -0.14
SS18-202ENST00000269138 TMEM240Q5SV17 173 aa14.19□□□□□ -0.14
SS18-202ENST00000269138 C9orf50Q5SZB4 431 aa14.19□□□□□ -0.14
SS18-202ENST00000269138 PRPF38BQ5VTL8 546 aaKnown RBP14.19□□□□□ -0.14
SS18-202ENST00000269138 ZNF365Q70YC5 407 aa14.19□□□□□ -0.14
SS18-202ENST00000269138 RHPN2Q8IUC4 686 aa14.19□□□□□ -0.14
SS18-202ENST00000269138 EXOC8Q8IYI6 725 aa14.19□□□□□ -0.14
SS18-202ENST00000269138 PDILTQ8N807 584 aa14.19□□□□□ -0.14
SS18-202ENST00000269138 ASAP3Q8TDY4 903 aa14.19□□□□□ -0.14
SS18-202ENST00000269138 TMEM40Q8WWA1 233 aa14.19□□□□□ -0.14
SS18-202ENST00000269138 OSMRQ99650 979 aa14.19□□□□□ -0.14
SS18-202ENST00000269138 SCAND2PQ9GZW5 306 aaPredicted RBP14.19□□□□□ -0.14
SS18-202ENST00000269138 PRO3102Q9H379 93 aa14.19□□□□□ -0.14
SS18-202ENST00000269138 AGO3Q9H9G7 860 aaKnown RBP14.19□□□□□ -0.14
SS18-202ENST00000269138 SCN5AQ14524 2016 aa14.18□□□□□ -0.14
SS18-202ENST00000269138 M0QZ92 97 aa14.18□□□□□ -0.14
SS18-202ENST00000269138 RPLP2P05387 115 aaKnown RBP14.18□□□□□ -0.14
SS18-202ENST00000269138 ARL2P36404 184 aa14.18□□□□□ -0.14
SS18-202ENST00000269138 TXLNAP40222 546 aa14.18□□□□□ -0.14
SS18-202ENST00000269138 SLC12A3P55017 1021 aa14.18□□□□□ -0.14
SS18-202ENST00000269138 LAMTOR4Q0VGL1 99 aa14.18□□□□□ -0.14
SS18-202ENST00000269138 NAALADL2Q58DX5 795 aa14.18□□□□□ -0.14
SS18-202ENST00000269138 FAM102BQ5T8I3 360 aa14.18□□□□□ -0.14
SS18-202ENST00000269138 RRAGBQ5VZM2 374 aa14.18□□□□□ -0.14
SS18-202ENST00000269138 RESP18Q5W5W9 173 aa14.18□□□□□ -0.14
SS18-202ENST00000269138 RINT1Q6NUQ1 792 aa14.18□□□□□ -0.14
SS18-202ENST00000269138 C1orf186Q6ZWK4 172 aa14.18□□□□□ -0.14
SS18-202ENST00000269138 RPUSD2Q8IZ73 545 aaKnown RBP14.18□□□□□ -0.14
SS18-202ENST00000269138 SYT2Q8N9I0 419 aaPredicted RBP14.18□□□□□ -0.14
SS18-202ENST00000269138 PSPC1Q8WXF1 523 aaKnown RBP14.18□□□□□ -0.14
SS18-202ENST00000269138 RAD54LQ92698 747 aa14.18□□□□□ -0.14
SS18-202ENST00000269138 BUD13Q9BRD0 619 aaKnown RBP eCLIP14.18□□□□□ -0.14
SS18-202ENST00000269138 POLR3FQ9H1D9 316 aaPredicted RBP14.18□□□□□ -0.14
SS18-202ENST00000269138 CCDC39Q9UFE4 941 aa14.18□□□□□ -0.14
SS18-202ENST00000269138 A0A087WZ62 844 aa14.17□□□□□ -0.14
SS18-202ENST00000269138 NPHP3-ACAD11A0A0J9YXS1 232 aa14.17□□□□□ -0.14
SS18-202ENST00000269138 CSDE1O75534 798 aaKnown RBP14.17□□□□□ -0.14
SS18-202ENST00000269138 PARNO95453 639 aaKnown RBP14.17□□□□□ -0.14
SS18-202ENST00000269138 SRGAP2CP0DJJ0 459 aa14.17□□□□□ -0.14
SS18-202ENST00000269138 BMP8BP34820 402 aa14.17□□□□□ -0.14
SS18-202ENST00000269138 CRYBB1P53674 252 aaPredicted RBP14.17□□□□□ -0.14
SS18-202ENST00000269138 SHHQ15465 462 aa14.17□□□□□ -0.14
SS18-202ENST00000269138 ARSHQ5FYA8 562 aa14.17□□□□□ -0.14
SS18-202ENST00000269138 KCTD17Q8N5Z5 321 aa14.17□□□□□ -0.14
SS18-202ENST00000269138 DBF4BQ8NFT6 615 aa14.17□□□□□ -0.14
SS18-202ENST00000269138 TCP11Q8WWU5 503 aa14.17□□□□□ -0.14
SS18-202ENST00000269138 NLRP7Q8WX94 980 aa14.17□□□□□ -0.14
SS18-202ENST00000269138 NLRP4Q96MN2 994 aa14.17□□□□□ -0.14
SS18-202ENST00000269138 FDXACB1Q9BRP7 624 aaPredicted RBP14.17□□□□□ -0.14
SS18-202ENST00000269138 COLQQ9Y215 455 aaPredicted RBP14.17□□□□□ -0.14
SS18-202ENST00000269138 NOC2LQ9Y3T9 749 aaKnown RBP14.17□□□□□ -0.14
SS18-202ENST00000269138 COL4A3BPQ9Y5P4 624 aa14.17□□□□□ -0.14
SS18-202ENST00000269138 ARID2Q68CP9 1835 aa14.17□□□□□ -0.14
SS18-202ENST00000269138 GAS2O43903 313 aaKnown RBP14.16□□□□□ -0.14
SS18-202ENST00000269138 FGBP02675 491 aa14.16□□□□□ -0.14
SS18-202ENST00000269138 GLRA2P23416 452 aa14.16□□□□□ -0.14
SS18-202ENST00000269138 CD52P31358 61 aa14.16□□□□□ -0.14
SS18-202ENST00000269138 RAD51AP2Q09MP3 1159 aa14.16□□□□□ -0.14
SS18-202ENST00000269138 PLEKHG4Q58EX7 1191 aa14.16□□□□□ -0.14
SS18-202ENST00000269138 ADALQ6DHV7 355 aa14.16□□□□□ -0.14
SS18-202ENST00000269138 CCDC73Q6ZRK6 1079 aa14.16□□□□□ -0.14
SS18-202ENST00000269138 OTOP2Q7RTS6 562 aa14.16□□□□□ -0.14
SS18-202ENST00000269138 GPBP1Q86WP2 473 aa14.16□□□□□ -0.14
SS18-202ENST00000269138 MCPH1Q8NEM0 835 aa14.16□□□□□ -0.14
SS18-202ENST00000269138 BSNDQ8WZ55 320 aa14.16□□□□□ -0.14
SS18-202ENST00000269138 SCLT1Q96NL6 688 aa14.16□□□□□ -0.14
SS18-202ENST00000269138 TET1Q8NFU7 2136 aa14.16□□□□□ -0.14
SS18-202ENST00000269138 TANC1Q9C0D5 1861 aa14.16□□□□□ -0.14
SS18-202ENST00000269138 A0A1B0GVL5 298 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 HIP1RO75146 1068 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 FGFR4P22455 802 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 CMA1P23946 247 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 STAT6P42226 847 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 CAPSQ13938 189 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 E2F4Q16254 413 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 TSHZ1Q6ZSZ6 1077 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 DAW1Q8N136 415 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 RNF149Q8NC42 400 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 LARP4BQ92615 738 aaKnown RBP14.15□□□□□ -0.14
SS18-202ENST00000269138 DHX58Q96C10 678 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 IFIH1Q9BYX4 1025 aaKnown RBP14.15□□□□□ -0.14
SS18-202ENST00000269138 IFT122Q9HBG6 1241 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 CXXC1Q9P0U4 656 aaPredicted RBP14.15□□□□□ -0.14
SS18-202ENST00000269138 STK17AQ9UEE5 414 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 PADI3Q9ULW8 664 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 TCHHQ07283 1943 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 SFI1A8K8P3 1242 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 POLR2DO15514 142 aaKnown RBP14.15□□□□□ -0.14
SS18-202ENST00000269138 ASAP2O43150 1006 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 PFKMP08237 780 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 DARSP14868 501 aaKnown RBP14.15□□□□□ -0.14
SS18-202ENST00000269138 EIF4BP23588 611 aaKnown RBP14.15□□□□□ -0.14
SS18-202ENST00000269138 CACNB1Q02641 598 aaPredicted RBP14.15□□□□□ -0.14
SS18-202ENST00000269138 MAPK7Q13164 816 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 CNKSR3Q6P9H4 555 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 PSRC1Q6PGN9 363 aaPredicted RBP14.15□□□□□ -0.14
SS18-202ENST00000269138 ZNF410Q86VK4 478 aa14.15□□□□□ -0.14
SS18-202ENST00000269138 FAM228AQ86W67 206 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms