RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 NFKBIBQ15653 356 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 IL17AQ16552 155 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 TMEM266Q2M3C6 531 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 PLEKHG4Q58EX7 1191 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 FAM173BQ6P4H8 233 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 LRRC71Q8N4P6 559 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 ZNF579Q8NAF0 562 aaKnown RBP11.02□□□□□ -0.65
CLN3-261ENST00000637686 SEPT8Q92599 483 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 CEP170P1Q96L14 293 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 SPATA32Q96LK8 384 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 CEP89Q96ST8 783 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 PPP1R16BQ96T49 567 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 CELF4Q9BZC1 486 aaKnown RBP11.02□□□□□ -0.65
CLN3-261ENST00000637686 CYP26B1Q9NR63 512 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 AKT3Q9Y243 479 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 GINS2Q9Y248 185 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 SLC4A7Q9Y6M7 1214 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 EVPLQ92817 2033 aa11.02□□□□□ -0.65
CLN3-261ENST00000637686 A0A087WWV3 80 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 ABHD14A-ACY1A0A1B0GW23 586 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 SPTLC2O15270 562 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 MED24O75448 989 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 BAIAP3O94812 1187 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 MBD3O95983 291 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 VTNP04004 478 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 SPATA31C1P0DKV0 1188 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 TMOD1P28289 359 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 FXR2P51116 673 aaKnown RBP eCLIP11.01□□□□□ -0.65
CLN3-261ENST00000637686 UBE2HP62256 183 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 SMAD3P84022 425 aaKnown RBP11.01□□□□□ -0.65
CLN3-261ENST00000637686 ATP2C1P98194 919 aaPredicted RBP11.01□□□□□ -0.65
CLN3-261ENST00000637686 IKBKEQ14164 716 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 LPIN1Q14693 890 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 STK38Q15208 465 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 SF3A1Q15459 793 aaKnown RBP11.01□□□□□ -0.65
CLN3-261ENST00000637686 SKOR2Q2VWA4 1001 aaPredicted RBP11.01□□□□□ -0.65
CLN3-261ENST00000637686 FBXO47Q5MNV8 452 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 ADALQ6DHV7 355 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 DTHD1Q6ZMT9 781 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 OTUD6AQ7L8S5 288 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 CATSPER3Q86XQ3 398 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 LINC01465Q8N7H1 131 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 NEK9Q8TD19 979 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 CDHR5Q9HBB8 845 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 TUFT1Q9NNX1 390 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 LMBRD1Q9NUN5 540 aa11.01□□□□□ -0.65
CLN3-261ENST00000637686 SIP14410 1827 aa11□□□□□ -0.65
CLN3-261ENST00000637686 IGKV6-21A0A0C4DH24 114 aa11□□□□□ -0.65
CLN3-261ENST00000637686 A0A1W2PQ27 194 aa11□□□□□ -0.65
CLN3-261ENST00000637686 A0A1W2PQ64 194 aa11□□□□□ -0.65
CLN3-261ENST00000637686 A0A1W2PQD8 194 aa11□□□□□ -0.65
CLN3-261ENST00000637686 GPR32O75388 356 aa11□□□□□ -0.65
CLN3-261ENST00000637686 LYPLA2O95372 231 aa11□□□□□ -0.65
CLN3-261ENST00000637686 ATP2A2P16615 1042 aaKnown RBP11□□□□□ -0.65
CLN3-261ENST00000637686 NCLP19338 710 aaKnown RBP11□□□□□ -0.65
CLN3-261ENST00000637686 PBX2P40425 430 aa11□□□□□ -0.65
CLN3-261ENST00000637686 KCNJ6P48051 423 aa11□□□□□ -0.65
CLN3-261ENST00000637686 RABGGTBP53611 331 aa11□□□□□ -0.65
CLN3-261ENST00000637686 MKRN4PQ13434 485 aaPredicted RBP11□□□□□ -0.65
CLN3-261ENST00000637686 DRP2Q13474 957 aa11□□□□□ -0.65
CLN3-261ENST00000637686 KIZQ2M2Z5 673 aa11□□□□□ -0.65
CLN3-261ENST00000637686 XKR9Q5GH70 373 aa11□□□□□ -0.65
CLN3-261ENST00000637686 LIN28BQ6ZN17 250 aaKnown RBP eCLIP11□□□□□ -0.65
CLN3-261ENST00000637686 TSHZ1Q6ZSZ6 1077 aa11□□□□□ -0.65
CLN3-261ENST00000637686 ERMNQ8TAM6 284 aa11□□□□□ -0.65
CLN3-261ENST00000637686 PIGOQ8TEQ8 1089 aa11□□□□□ -0.65
CLN3-261ENST00000637686 ZNF668Q96K58 619 aaPredicted RBP11□□□□□ -0.65
CLN3-261ENST00000637686 MAP7D2Q96T17 732 aa11□□□□□ -0.65
CLN3-261ENST00000637686 POLR3CQ9BUI4 534 aaPredicted RBP11□□□□□ -0.65
CLN3-261ENST00000637686 IFIH1Q9BYX4 1025 aaKnown RBP11□□□□□ -0.65
CLN3-261ENST00000637686 AGO3Q9H9G7 860 aaKnown RBP11□□□□□ -0.65
CLN3-261ENST00000637686 BMP2KQ9NSY1 1161 aaPredicted RBP11□□□□□ -0.65
CLN3-261ENST00000637686 LRWD1Q9UFC0 647 aa11□□□□□ -0.65
CLN3-261ENST00000637686 CLIC4Q9Y696 253 aa11□□□□□ -0.65
CLN3-261ENST00000637686 SQORQ9Y6N5 450 aa11□□□□□ -0.65
CLN3-261ENST00000637686 LAMA2P24043 3122 aaKnown RBP11□□□□□ -0.65
CLN3-261ENST00000637686 KDM3AQ9Y4C1 1321 aa11□□□□□ -0.65
CLN3-261ENST00000637686 FAM237AA0A1B0GTK4 181 aa10.99□□□□□ -0.65
CLN3-261ENST00000637686 PP2D1A8MPX8 630 aa10.99□□□□□ -0.65
CLN3-261ENST00000637686 SLC26A4O43511 780 aa10.99□□□□□ -0.65
CLN3-261ENST00000637686 CUTAO60888 179 aa10.99□□□□□ -0.65
CLN3-261ENST00000637686 EFCAB14O75071 495 aa10.99□□□□□ -0.65
CLN3-261ENST00000637686 MAFO75444 373 aaPredicted RBP10.99□□□□□ -0.65
CLN3-261ENST00000637686 RPA1P27694 616 aa10.99□□□□□ -0.65
CLN3-261ENST00000637686 CDC25AP30304 524 aa10.99□□□□□ -0.65
CLN3-261ENST00000637686 CD52P31358 61 aa10.99□□□□□ -0.65
CLN3-261ENST00000637686 CCT6AP40227 531 aaKnown RBP10.99□□□□□ -0.65
CLN3-261ENST00000637686 RFC5P40937 340 aa10.99□□□□□ -0.65
CLN3-261ENST00000637686 CRYBB1P53674 252 aaPredicted RBP10.99□□□□□ -0.65
CLN3-261ENST00000637686 POLGP54098 1239 aaPredicted RBP10.99□□□□□ -0.65
CLN3-261ENST00000637686 NLRP11P59045 1033 aaKnown RBP10.99□□□□□ -0.65
CLN3-261ENST00000637686 WDR5P61964 334 aaKnown RBP10.99□□□□□ -0.65
CLN3-261ENST00000637686 DEFB103AP81534 67 aa10.99□□□□□ -0.65
CLN3-261ENST00000637686 PDIA5Q14554 519 aa10.99□□□□□ -0.65
CLN3-261ENST00000637686 ECM1Q16610 540 aa10.99□□□□□ -0.65
CLN3-261ENST00000637686 POTEGQ6S5H5 508 aa10.99□□□□□ -0.65
CLN3-261ENST00000637686 TMCO2Q7Z6W1 182 aaPredicted RBP10.99□□□□□ -0.65
CLN3-261ENST00000637686 IGSF22Q8N9C0 903 aa10.99□□□□□ -0.65
CLN3-261ENST00000637686 KRI1Q8N9T8 703 aaKnown RBP10.99□□□□□ -0.65
CLN3-261ENST00000637686 PHOSPHO2Q8TCD6 241 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms