RNA–Protein interactions for RNA: ENST00000597649.5

SHKBP1-215, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 781 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-215ENST00000597649 PLPP4Q5VZY2 271 aa18.72■□□□□ 0.59
SHKBP1-215ENST00000597649 PDE12Q6L8Q7 609 aaKnown RBP18.72■□□□□ 0.59
SHKBP1-215ENST00000597649 SWSAP1Q6NVH7 229 aa18.72■□□□□ 0.59
SHKBP1-215ENST00000597649 ANKRD54Q6NXT1 300 aa18.72■□□□□ 0.59
SHKBP1-215ENST00000597649 MICU3Q86XE3 530 aa18.72■□□□□ 0.59
SHKBP1-215ENST00000597649 OSMRQ99650 979 aa18.72■□□□□ 0.59
SHKBP1-215ENST00000597649 PRRX2Q99811 253 aa18.72■□□□□ 0.59
SHKBP1-215ENST00000597649 ANO3Q9BYT9 981 aa18.72■□□□□ 0.59
SHKBP1-215ENST00000597649 CDH22Q9UJ99 828 aa18.72■□□□□ 0.59
SHKBP1-215ENST00000597649 CNTNAP5Q8WYK1 1306 aa18.72■□□□□ 0.59
SHKBP1-215ENST00000597649 FAM86B1E9PN63 330 aa18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 FOSP01100 380 aaPredicted RBP18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 FAM86B2P0C5J1 330 aa18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 SREBF1P36956 1147 aa18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 CLK2P49760 499 aaKnown RBP18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 CRYBB1P53674 252 aaPredicted RBP18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 NAPAP54920 295 aa18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 PLCB3Q01970 1234 aa18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 NECTIN1Q15223 517 aa18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 ZNF484Q5JVG2 852 aa18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 CREB3L3Q68CJ9 461 aa18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 LLGL2Q6P1M3 1020 aa18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 PDXDC2PQ6P474 469 aa18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 FAM43BQ6ZT52 329 aaPredicted RBP18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 SGMS1Q86VZ5 419 aa18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 MRPS27Q92552 414 aaKnown RBP18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 SNX27Q96L92 541 aa18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 CASD1Q96PB1 797 aa18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 ATP6V0A4Q9HBG4 840 aa18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 TMEM161AQ9NX61 479 aa18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 LZTS1Q9Y250 596 aa18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 V9GY48 417 aaPredicted RBP18.71■□□□□ 0.59
SHKBP1-215ENST00000597649 SMCO2A6NFE2 343 aa18.7■□□□□ 0.58
SHKBP1-215ENST00000597649 ADAMTS3O15072 1205 aa18.7■□□□□ 0.58
SHKBP1-215ENST00000597649 ST18O60284 1047 aa18.7■□□□□ 0.58
SHKBP1-215ENST00000597649 C22orf31O95567 290 aa18.7■□□□□ 0.58
SHKBP1-215ENST00000597649 VTNP04004 478 aa18.7■□□□□ 0.58
SHKBP1-215ENST00000597649 SP100P23497 879 aaPredicted RBP18.7■□□□□ 0.58
SHKBP1-215ENST00000597649 PBX3P40426 434 aa18.7■□□□□ 0.58
SHKBP1-215ENST00000597649 RASGRP4Q8TDF6 673 aa18.7■□□□□ 0.58
SHKBP1-215ENST00000597649 TCF25Q9BQ70 676 aa18.7■□□□□ 0.58
SHKBP1-215ENST00000597649 ELAC1Q9H777 363 aaKnown RBP18.7■□□□□ 0.58
SHKBP1-215ENST00000597649 ZNF302Q9NR11 478 aa18.7■□□□□ 0.58
SHKBP1-215ENST00000597649 COL1A2P08123 1366 aa18.69■□□□□ 0.58
SHKBP1-215ENST00000597649 EVPLQ92817 2033 aa18.69■□□□□ 0.58
SHKBP1-215ENST00000597649 IGLV3-22A0A075B6J6 115 aa18.69■□□□□ 0.58
SHKBP1-215ENST00000597649 LAG3P18627 525 aa18.69■□□□□ 0.58
SHKBP1-215ENST00000597649 ADCY7P51828 1080 aa18.69■□□□□ 0.58
SHKBP1-215ENST00000597649 FAM160B1Q5W0V3 765 aa18.69■□□□□ 0.58
SHKBP1-215ENST00000597649 APOA5Q6Q788 366 aa18.69■□□□□ 0.58
SHKBP1-215ENST00000597649 NIPA1Q7RTP0 329 aa18.69■□□□□ 0.58
SHKBP1-215ENST00000597649 ANO2Q9NQ90 1003 aa18.69■□□□□ 0.58
SHKBP1-215ENST00000597649 BRPF3Q9ULD4 1205 aa18.69■□□□□ 0.58
SHKBP1-215ENST00000597649 KMT2EQ8IZD2 1858 aa18.69■□□□□ 0.58
SHKBP1-215ENST00000597649 EIF5BO60841 1220 aaKnown RBP18.68■□□□□ 0.58
SHKBP1-215ENST00000597649 ZNF76P36508 570 aa18.68■□□□□ 0.58
SHKBP1-215ENST00000597649 ODR4Q5SWX8 454 aa18.68■□□□□ 0.58
SHKBP1-215ENST00000597649 PPP1R18Q6NYC8 613 aa18.68■□□□□ 0.58
SHKBP1-215ENST00000597649 KCNT2Q6UVM3 1135 aa18.68■□□□□ 0.58
SHKBP1-215ENST00000597649 TRMT1LQ7Z2T5 733 aaKnown RBP18.68■□□□□ 0.58
SHKBP1-215ENST00000597649 PLA2G4DQ86XP0 818 aa18.68■□□□□ 0.58
SHKBP1-215ENST00000597649 METTL13Q8N6R0 699 aa18.68■□□□□ 0.58
SHKBP1-215ENST00000597649 CRYGNQ8WXF5 182 aa18.68■□□□□ 0.58
SHKBP1-215ENST00000597649 RIPOR3Q96MK2 946 aa18.68■□□□□ 0.58
SHKBP1-215ENST00000597649 TMEM117Q9H0C3 514 aa18.68■□□□□ 0.58
SHKBP1-215ENST00000597649 NGRNQ9NPE2 291 aaKnown RBP18.68■□□□□ 0.58
SHKBP1-215ENST00000597649 FAM217BQ9NTX9 383 aaPredicted RBP18.68■□□□□ 0.58
SHKBP1-215ENST00000597649 RNF216Q9NWF9 866 aaPredicted RBP18.68■□□□□ 0.58
SHKBP1-215ENST00000597649 PUF60Q9UHX1 559 aaKnown RBP18.68■□□□□ 0.58
SHKBP1-215ENST00000597649 MAFBQ9Y5Q3 323 aaPredicted RBP18.68■□□□□ 0.58
SHKBP1-215ENST00000597649 FSD2A1L4K1 749 aa18.67■□□□□ 0.58
SHKBP1-215ENST00000597649 GFRA3O60609 400 aa18.67■□□□□ 0.58
SHKBP1-215ENST00000597649 JAKMIP3Q5VZ66 844 aa18.67■□□□□ 0.58
SHKBP1-215ENST00000597649 MIS18BP1Q6P0N0 1132 aa18.67■□□□□ 0.58
SHKBP1-215ENST00000597649 TEX2Q8IWB9 1127 aa18.67■□□□□ 0.58
SHKBP1-215ENST00000597649 TCEANC2Q96MN5 208 aa18.67■□□□□ 0.58
SHKBP1-215ENST00000597649 ADAMTS10Q9H324 1103 aa18.67■□□□□ 0.58
SHKBP1-215ENST00000597649 ENTPD7Q9NQZ7 604 aa18.67■□□□□ 0.58
SHKBP1-215ENST00000597649 BARHL2Q9NY43 387 aa18.67■□□□□ 0.58
SHKBP1-215ENST00000597649 MYO10Q9HD67 2058 aa18.67■□□□□ 0.58
SHKBP1-215ENST00000597649 H0Y858 1186 aa18.66■□□□□ 0.58
SHKBP1-215ENST00000597649 IPO5O00410 1097 aaKnown RBP18.66■□□□□ 0.58
SHKBP1-215ENST00000597649 REC8O95072 547 aa18.66■□□□□ 0.58
SHKBP1-215ENST00000597649 HOXB8P17481 243 aaPredicted RBP18.66■□□□□ 0.58
SHKBP1-215ENST00000597649 CLCN3P51790 818 aa18.66■□□□□ 0.58
SHKBP1-215ENST00000597649 EXOSC10Q01780 885 aaKnown RBP18.66■□□□□ 0.58
SHKBP1-215ENST00000597649 AP3B2Q13367 1082 aa18.66■□□□□ 0.58
SHKBP1-215ENST00000597649 CKAP2LQ8IYA6 745 aa18.66■□□□□ 0.58
SHKBP1-215ENST00000597649 LINC01465Q8N7H1 131 aa18.66■□□□□ 0.58
SHKBP1-215ENST00000597649 KREMEN2Q8NCW0 462 aa18.66■□□□□ 0.58
SHKBP1-215ENST00000597649 BBXQ8WY36 941 aaPredicted RBP18.66■□□□□ 0.58
SHKBP1-215ENST00000597649 ATOH1Q92858 354 aaPredicted RBP18.66■□□□□ 0.58
SHKBP1-215ENST00000597649 SMOC2Q9H3U7 446 aa18.66■□□□□ 0.58
SHKBP1-215ENST00000597649 RBM28Q9NW13 759 aaKnown RBP18.66■□□□□ 0.58
SHKBP1-215ENST00000597649 C2orf71A6NGG8 1288 aa18.65■□□□□ 0.58
SHKBP1-215ENST00000597649 CYP3A4P08684 503 aa18.65■□□□□ 0.58
SHKBP1-215ENST00000597649 CDC27P30260 824 aa18.65■□□□□ 0.58
SHKBP1-215ENST00000597649 NLRP11P59045 1033 aaKnown RBP18.65■□□□□ 0.58
SHKBP1-215ENST00000597649 RTN1Q16799 776 aa18.65■□□□□ 0.58
SHKBP1-215ENST00000597649 CLLU1OSQ5K130 101 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms