RNA–Protein interactions for RNA: ENST00000576222.1

PCDHGB3-201, Transcript of protocadherin gamma subfamily B, 3, humanhuman

TSL 1 (best) BASIC

Gene PCDHGB3, Length 4,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGB3-201ENST00000576222 KLC1Q07866 573 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 ORC2Q13416 577 aaPredicted RBP14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 KNOP1Q1ED39 458 aaKnown RBP14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 BSPRYQ5W0U4 402 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 FGD4Q96M96 766 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 TMBIM4Q9HC24 238 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 DCP1AQ9NPI6 582 aaPredicted RBP14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 FGFR1OP2Q9NVK5 253 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 SLC8A3P57103 927 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 GTF2IP78347 998 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 DBN1Q16643 649 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 NAALADL2Q58DX5 795 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 KCTD1Q719H9 257 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 NGLY1Q96IV0 654 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 TEKT3Q9BXF9 490 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 PCDHA6Q9UN73 950 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 PCDHA8Q9Y5H6 950 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 NPHP4O75161 1426 aaPredicted RBP14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 ZC3H13Q5T200 1668 aaKnown RBP14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 TTLL1O95922 423 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 SCP2P22307 547 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 GRM4Q14833 912 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 PYROXD1Q8WU10 500 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 IFT122Q9HBG6 1241 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 DBR1Q9UK59 544 aaKnown RBP14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 SALL1Q9NSC2 1324 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 SFI1A8K8P3 1242 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 IGF2BP3O00425 579 aaKnown RBP eCLIP14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 SYF2O95926 243 aaKnown RBP14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 BBS9Q3SYG4 887 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 XKR9Q5GH70 373 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 NT5DC1Q5TFE4 455 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 EPB41L4AQ9HCS5 686 aaPredicted RBP14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 MAD1L1Q9Y6D9 718 aa14.09□□□□□ -0.15
PCDHGB3-201ENST00000576222 PPRC1Q5VV67 1664 aaKnown RBP14.08□□□□□ -0.15
PCDHGB3-201ENST00000576222 USP11P51784 963 aa14.08□□□□□ -0.15
PCDHGB3-201ENST00000576222 ARHGAP4P98171 946 aa14.08□□□□□ -0.15
PCDHGB3-201ENST00000576222 PPP2R5DQ14738 602 aa14.08□□□□□ -0.15
PCDHGB3-201ENST00000576222 CELF4Q9BZC1 486 aaKnown RBP14.08□□□□□ -0.15
PCDHGB3-201ENST00000576222 MRPL47Q9HD33 250 aaKnown RBP14.08□□□□□ -0.15
PCDHGB3-201ENST00000576222 STAM2O75886 525 aa14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 PDHBP11177 359 aa14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 GEN1Q17RS7 908 aa14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 HDAC7Q8WUI4 952 aa14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 POMGNT1Q8WZA1 660 aa14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 INTS13Q9NVM9 706 aa14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 TMOD4Q9NZQ9 345 aa14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 CEMIPQ8WUJ3 1361 aa14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 SPAG7O75391 227 aa14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 FTLP02792 175 aaPredicted RBP14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 POLR2MP0CAP2 368 aa14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 PDIA6Q15084 440 aa14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 GRAMD1BQ3KR37 738 aa14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 TRIM59Q8IWR1 403 aa14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 CPXCR1Q8N123 301 aa14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 AGGF1Q8N302 714 aaeCLIP14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 AFAP1L2Q8N4X5 818 aa14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 ACCSQ96QU6 501 aa14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 NACC1Q96RE7 527 aa14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 TMEM260Q9NX78 707 aa14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 PPARGC1AQ9UBK2 798 aaKnown RBP14.08□□□□□ -0.16
PCDHGB3-201ENST00000576222 PNMA6FA0A0J9YX94 578 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 ANP32DO95626 131 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 KRT1P04264 644 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 GLI1P08151 1106 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 RANBP1P43487 201 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 CDK8P49336 464 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 TRIM28Q13263 835 aaKnown RBP14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 KIRREL3Q8IZU9 778 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 FBXL16Q8N461 479 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 AENQ8WTP8 325 aaKnown RBP14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 GOLPH3Q9H4A6 298 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 TMEM206Q9H813 350 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 ANAPC7Q9UJX3 599 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 POTEB3A0JP26 581 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 POTECB2RU33 542 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 ORC4O43929 436 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 ZWINTO95229 277 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 GALCP54803 685 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 CDK17Q00537 523 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 FIGNQ5HY92 759 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 SUSD4Q5VX71 490 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 POTEBQ6S5H4 581 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 LRRC34Q8IZ02 419 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 ARHGAP18Q8N392 663 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 TTC17Q96AE7 1141 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 HEMGNQ9BXL5 484 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 IRAK4Q9NWZ3 460 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 CNOT8Q9UFF9 292 aaKnown RBP14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 CDC42BPGQ6DT37 1551 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 PPP1R12AO14974 1030 aaPredicted RBP14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 NXNQ6DKJ4 435 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 CNPY4Q8N129 248 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 NME8Q8N427 588 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 NLRP7Q8WX94 980 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 HAUS1Q96CS2 278 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 A0A0U1RQJ8 604 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 H7C0C1 242 aa14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 IPO5O00410 1097 aaKnown RBP14.07□□□□□ -0.16
PCDHGB3-201ENST00000576222 GMNNO75496 209 aa14.07□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms