RNA–Protein interactions for RNA: ENST00000560541.5

CUX1-218, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 3,176 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-218ENST00000560541 SAAL1Q96ER3 474 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 SUDS3Q9H7L9 328 aaPredicted RBP12.32□□□□□ -0.44
CUX1-218ENST00000560541 KLC4Q9NSK0 619 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 USP40Q9NVE5 1235 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 LMCD1Q9NZU5 365 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 NOC2LQ9Y3T9 749 aaKnown RBP12.32□□□□□ -0.44
CUX1-218ENST00000560541 PCDHB13Q9Y5F0 798 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 SART1O43290 800 aaKnown RBP12.32□□□□□ -0.44
CUX1-218ENST00000560541 AFPP02771 609 aaKnown RBP12.32□□□□□ -0.44
CUX1-218ENST00000560541 ECHS1P30084 290 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 HSD17B3P37058 310 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 MARSP56192 900 aaKnown RBP12.32□□□□□ -0.44
CUX1-218ENST00000560541 HDLBPQ00341 1268 aaKnown RBP12.32□□□□□ -0.44
CUX1-218ENST00000560541 NFIAQ12857 509 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 ADAT2Q7Z6V5 191 aaKnown RBP12.32□□□□□ -0.44
CUX1-218ENST00000560541 WHAMMQ8TF30 809 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 FAM163AQ96GL9 167 aaPredicted RBP12.32□□□□□ -0.44
CUX1-218ENST00000560541 CELF4Q9BZC1 486 aaKnown RBP12.32□□□□□ -0.44
CUX1-218ENST00000560541 TRIM31Q9BZY9 425 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 E7EVH7 732 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 KRIT1O00522 736 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 PPP1R37O75864 691 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 POLD1P28340 1107 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 USP11P51784 963 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 GIT2Q14161 759 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 HYIQ5T013 277 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 HHATQ5VTY9 493 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 PPP1R18Q6NYC8 613 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 PEX26Q7Z412 305 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 ZFPM1Q8IX07 1006 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 CERS5Q8N5B7 392 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 UBLCP1Q8WVY7 318 aaPredicted RBP12.32□□□□□ -0.44
CUX1-218ENST00000560541 KCNMB3Q9NPA1 279 aa12.32□□□□□ -0.44
CUX1-218ENST00000560541 ATF5Q9Y2D1 282 aaPredicted RBP12.32□□□□□ -0.44
CUX1-218ENST00000560541 GOLGA6L10A6NI86 522 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 EIF4E1BA6NMX2 242 aaKnown RBP12.31□□□□□ -0.44
CUX1-218ENST00000560541 RGL2O15211 777 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 GFPT2O94808 682 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 PYGBP11216 843 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 PECAM1P16284 738 aaPredicted RBP12.31□□□□□ -0.44
CUX1-218ENST00000560541 ABCD1P33897 745 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 CTNNA1P35221 906 aaKnown RBP12.31□□□□□ -0.44
CUX1-218ENST00000560541 RAB27AP51159 221 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 TCP10Q12799 353 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 UAP1Q16222 522 aaPredicted RBP12.31□□□□□ -0.44
CUX1-218ENST00000560541 KNOP1Q1ED39 458 aaKnown RBP12.31□□□□□ -0.44
CUX1-218ENST00000560541 C15orf52Q6ZUT6 534 aaKnown RBP12.31□□□□□ -0.44
CUX1-218ENST00000560541 ANKRD23Q86SG2 305 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 U2AF1L4Q8WU68 220 aaKnown RBP12.31□□□□□ -0.44
CUX1-218ENST00000560541 LMBR1Q8WVP7 490 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 NGLY1Q96IV0 654 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 EPN3Q9H201 632 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 DPH5Q9H2P9 285 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 GCNT4Q9P109 453 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 DAPK3O43293 454 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 GCNT3O95395 438 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 FNTAP49354 379 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 DDR1Q08345 913 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 ITGB3BPQ13352 177 aaPredicted RBP12.31□□□□□ -0.44
CUX1-218ENST00000560541 PTGISQ16647 500 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 DOK7Q18PE1 504 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 FOXR2Q6PJQ5 311 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 ARHGAP27Q6ZUM4 889 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 DAAM2Q86T65 1068 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 MREGQ8N565 214 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 LRRC57Q8N9N7 239 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 TPCN2Q8NHX9 752 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 CYP2W1Q8TAV3 490 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 ZNF473Q8WTR7 871 aaKnown RBP12.31□□□□□ -0.44
CUX1-218ENST00000560541 ISCUQ9H1K1 167 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 BHMT2Q9H2M3 363 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 TMEM59LQ9UK28 342 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 PLIN4Q96Q06 1357 aa12.31□□□□□ -0.44
CUX1-218ENST00000560541 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.3□□□□□ -0.44
CUX1-218ENST00000560541 UPP2O95045 317 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 EZRP15311 586 aaKnown RBP12.3□□□□□ -0.44
CUX1-218ENST00000560541 TMOD1P28289 359 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 COPB2P35606 906 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 HSPA9P38646 679 aaKnown RBP12.3□□□□□ -0.44
CUX1-218ENST00000560541 MDH1P40925 334 aaKnown RBP12.3□□□□□ -0.44
CUX1-218ENST00000560541 EDRF1Q3B7T1 1238 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 GPATCH4Q5T3I0 446 aaKnown RBP12.3□□□□□ -0.44
CUX1-218ENST00000560541 DPY19L2P1Q6NXN4 242 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 KSR1Q8IVT5 923 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 CCT8L2Q96SF2 557 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 OSGEPQ9NPF4 335 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 DNM3Q9UQ16 869 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 NHSQ6T4R5 1651 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 GCOM1H8Y6P7 765 aaPredicted RBP12.3□□□□□ -0.44
CUX1-218ENST00000560541 PGRMC1O00264 195 aaKnown RBP12.3□□□□□ -0.44
CUX1-218ENST00000560541 TTI1O43156 1089 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 TPD52L2O43399 206 aaKnown RBP12.3□□□□□ -0.44
CUX1-218ENST00000560541 MYZAPP0CAP1 466 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 ABCB4P21439 1286 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 HOXA13P31271 388 aaPredicted RBP12.3□□□□□ -0.44
CUX1-218ENST00000560541 ARHGAP4P98171 946 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 IKQ13123 557 aaPredicted RBP12.3□□□□□ -0.44
CUX1-218ENST00000560541 PRPF4BQ13523 1007 aaKnown RBP12.3□□□□□ -0.44
CUX1-218ENST00000560541 ODF2Q5BJF6 829 aa12.3□□□□□ -0.44
CUX1-218ENST00000560541 NLRP14Q86W24 1093 aa12.3□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms