RNA–Protein interactions for RNA: ENST00000560502.5

LDLR-213, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 509 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-213ENST00000560502 FOSP01100 380 aaPredicted RBP15.82■□□□□ 0.12
LDLR-213ENST00000560502 SCG2P13521 617 aa15.82■□□□□ 0.12
LDLR-213ENST00000560502 FDPSP14324 419 aaKnown RBP15.82■□□□□ 0.12
LDLR-213ENST00000560502 ADD1P35611 737 aaKnown RBP15.82■□□□□ 0.12
LDLR-213ENST00000560502 STAT5BP51692 787 aa15.82■□□□□ 0.12
LDLR-213ENST00000560502 PAK2Q13177 524 aa15.82■□□□□ 0.12
LDLR-213ENST00000560502 CEP55Q53EZ4 464 aa15.82■□□□□ 0.12
LDLR-213ENST00000560502 MTHFD1LQ6UB35 978 aa15.82■□□□□ 0.12
LDLR-213ENST00000560502 FAM177A1Q8N128 213 aaPredicted RBP15.82■□□□□ 0.12
LDLR-213ENST00000560502 TMEM87AQ8NBN3 555 aa15.82■□□□□ 0.12
LDLR-213ENST00000560502 SPPL3Q8TCT6 385 aa15.82■□□□□ 0.12
LDLR-213ENST00000560502 PGBD1Q96JS3 809 aa15.82■□□□□ 0.12
LDLR-213ENST00000560502 C8orf76Q96K31 380 aa15.82■□□□□ 0.12
LDLR-213ENST00000560502 MSLNLQ96KJ4 702 aa15.82■□□□□ 0.12
LDLR-213ENST00000560502 POP1Q99575 1024 aaKnown RBP15.82■□□□□ 0.12
LDLR-213ENST00000560502 ANO3Q9BYT9 981 aa15.82■□□□□ 0.12
LDLR-213ENST00000560502 CD207Q9UJ71 328 aa15.82■□□□□ 0.12
LDLR-213ENST00000560502 C5orf42Q9H799 3197 aa15.81■□□□□ 0.12
LDLR-213ENST00000560502 hCG_1984214I3L0E3 225 aa15.81■□□□□ 0.12
LDLR-213ENST00000560502 STXBP3O00186 592 aa15.81■□□□□ 0.12
LDLR-213ENST00000560502 CCNE2O96020 404 aa15.81■□□□□ 0.12
LDLR-213ENST00000560502 STAG3L1P0CL83 205 aa15.81■□□□□ 0.12
LDLR-213ENST00000560502 SREBF1P36956 1147 aa15.81■□□□□ 0.12
LDLR-213ENST00000560502 CLK2P49760 499 aaKnown RBP15.81■□□□□ 0.12
LDLR-213ENST00000560502 SLC26A2P50443 739 aa15.81■□□□□ 0.12
LDLR-213ENST00000560502 ADCY7P51828 1080 aa15.81■□□□□ 0.12
LDLR-213ENST00000560502 NAPAP54920 295 aa15.81■□□□□ 0.12
LDLR-213ENST00000560502 TRIM29Q14134 588 aa15.81■□□□□ 0.12
LDLR-213ENST00000560502 FAM43BQ6ZT52 329 aaPredicted RBP15.81■□□□□ 0.12
LDLR-213ENST00000560502 NME8Q8N427 588 aa15.81■□□□□ 0.12
LDLR-213ENST00000560502 ZNF713Q8N859 430 aaPredicted RBP15.81■□□□□ 0.12
LDLR-213ENST00000560502 KLHL23Q8NBE8 558 aa15.81■□□□□ 0.12
LDLR-213ENST00000560502 FBXO18Q8NFZ0 1043 aa15.81■□□□□ 0.12
LDLR-213ENST00000560502 COL1A2P08123 1366 aa15.8■□□□□ 0.12
LDLR-213ENST00000560502 CSPG5O95196 566 aa15.8■□□□□ 0.12
LDLR-213ENST00000560502 EYA4O95677 639 aa15.8■□□□□ 0.12
LDLR-213ENST00000560502 XBP1P17861 261 aa15.8■□□□□ 0.12
LDLR-213ENST00000560502 GATMP50440 423 aa15.8■□□□□ 0.12
LDLR-213ENST00000560502 KRT76Q01546 638 aa15.8■□□□□ 0.12
LDLR-213ENST00000560502 AKAP17AQ02040 695 aaKnown RBP15.8■□□□□ 0.12
LDLR-213ENST00000560502 RESTQ13127 1097 aa15.8■□□□□ 0.12
LDLR-213ENST00000560502 AP3B2Q13367 1082 aa15.8■□□□□ 0.12
LDLR-213ENST00000560502 PAN2Q504Q3 1202 aaKnown RBP15.8■□□□□ 0.12
LDLR-213ENST00000560502 HERC4Q5GLZ8 1057 aaPredicted RBP15.8■□□□□ 0.12
LDLR-213ENST00000560502 MCTP1Q6DN14 999 aa15.8■□□□□ 0.12
LDLR-213ENST00000560502 NIPA1Q7RTP0 329 aa15.8■□□□□ 0.12
LDLR-213ENST00000560502 BRAPQ7Z569 592 aa15.8■□□□□ 0.12
LDLR-213ENST00000560502 ADGRD2Q7Z7M1 963 aa15.8■□□□□ 0.12
LDLR-213ENST00000560502 EFHBQ8N7U6 833 aa15.8■□□□□ 0.12
LDLR-213ENST00000560502 ATP8B4Q8TF62 1192 aa15.8■□□□□ 0.12
LDLR-213ENST00000560502 UIMC1Q96RL1 719 aa15.8■□□□□ 0.12
LDLR-213ENST00000560502 IGFLR1Q9H665 355 aa15.8■□□□□ 0.12
LDLR-213ENST00000560502 ERVK-5Q9HDB9 667 aa15.8■□□□□ 0.12
LDLR-213ENST00000560502 CLEC1BQ9P126 229 aa15.8■□□□□ 0.12
LDLR-213ENST00000560502 PRPF3O43395 683 aaKnown RBP15.79■□□□□ 0.12
LDLR-213ENST00000560502 MGEA5O60502 916 aa15.79■□□□□ 0.12
LDLR-213ENST00000560502 GLP2RO95838 553 aa15.79■□□□□ 0.12
LDLR-213ENST00000560502 SARSP49591 514 aaKnown RBP15.79■□□□□ 0.12
LDLR-213ENST00000560502 KRT85P78386 507 aa15.79■□□□□ 0.12
LDLR-213ENST00000560502 TMEM266Q2M3C6 531 aa15.79■□□□□ 0.12
LDLR-213ENST00000560502 ABHD15Q6UXT9 468 aa15.79■□□□□ 0.12
LDLR-213ENST00000560502 CCDC60Q8IWA6 550 aaPredicted RBP15.79■□□□□ 0.12
LDLR-213ENST00000560502 POF1BQ8WVV4 589 aa15.79■□□□□ 0.12
LDLR-213ENST00000560502 TMEM40Q8WWA1 233 aa15.79■□□□□ 0.12
LDLR-213ENST00000560502 CRYGNQ8WXF5 182 aa15.79■□□□□ 0.12
LDLR-213ENST00000560502 PPP2R3CQ969Q6 453 aa15.79■□□□□ 0.12
LDLR-213ENST00000560502 SLC26A6Q9BXS9 759 aa15.79■□□□□ 0.12
LDLR-213ENST00000560502 KCNH6Q9H252 994 aa15.79■□□□□ 0.12
LDLR-213ENST00000560502 TMEM260Q9NX78 707 aa15.79■□□□□ 0.12
LDLR-213ENST00000560502 BARHL2Q9NY43 387 aa15.79■□□□□ 0.12
LDLR-213ENST00000560502 MUTYHQ9UIF7 546 aa15.79■□□□□ 0.12
LDLR-213ENST00000560502 MYH15Q9Y2K3 1946 aa15.78■□□□□ 0.12
LDLR-213ENST00000560502 TRIOO75962 3097 aa15.78■□□□□ 0.12
LDLR-213ENST00000560502 IGLV3-22A0A075B6J6 115 aa15.78■□□□□ 0.12
LDLR-213ENST00000560502 SMCO2A6NFE2 343 aa15.78■□□□□ 0.12
LDLR-213ENST00000560502 ZBTB42B2RXF5 422 aa15.78■□□□□ 0.12
LDLR-213ENST00000560502 FAM86B1E9PN63 330 aa15.78■□□□□ 0.12
LDLR-213ENST00000560502 DHX15O43143 795 aaKnown RBP15.78■□□□□ 0.12
LDLR-213ENST00000560502 HBP1O60381 514 aa15.78■□□□□ 0.12
LDLR-213ENST00000560502 FAM86B2P0C5J1 330 aa15.78■□□□□ 0.12
LDLR-213ENST00000560502 KLRC1P26715 233 aa15.78■□□□□ 0.12
LDLR-213ENST00000560502 NDUFV1P49821 464 aa15.78■□□□□ 0.12
LDLR-213ENST00000560502 COASYQ13057 564 aa15.78■□□□□ 0.12
LDLR-213ENST00000560502 HFE2Q6ZVN8 426 aa15.78■□□□□ 0.12
LDLR-213ENST00000560502 RNF135Q8IUD6 432 aa15.78■□□□□ 0.12
LDLR-213ENST00000560502 KIAA0319LQ8IZA0 1049 aa15.78■□□□□ 0.12
LDLR-213ENST00000560502 SMRP1Q8NCR6 262 aa15.78■□□□□ 0.12
LDLR-213ENST00000560502 SCAND2PQ9GZW5 306 aaPredicted RBP15.78■□□□□ 0.12
LDLR-213ENST00000560502 CDHR5Q9HBB8 845 aa15.78■□□□□ 0.12
LDLR-213ENST00000560502 NOC2LQ9Y3T9 749 aaKnown RBP15.78■□□□□ 0.12
LDLR-213ENST00000560502 V9GY48 417 aaPredicted RBP15.78■□□□□ 0.12
LDLR-213ENST00000560502 C9IYK1 514 aa15.77■□□□□ 0.12
LDLR-213ENST00000560502 MBD3O95983 291 aa15.77■□□□□ 0.12
LDLR-213ENST00000560502 ATP4AP20648 1035 aa15.77■□□□□ 0.12
LDLR-213ENST00000560502 FOXD4L5Q5VV16 416 aaPredicted RBP15.77■□□□□ 0.12
LDLR-213ENST00000560502 FAM160B1Q5W0V3 765 aa15.77■□□□□ 0.12
LDLR-213ENST00000560502 FOXD4L4Q8WXT5 416 aaPredicted RBP15.77■□□□□ 0.12
LDLR-213ENST00000560502 PHKBQ93100 1093 aa15.77■□□□□ 0.12
LDLR-213ENST00000560502 GLT8D2Q9H1C3 349 aa15.77■□□□□ 0.12
LDLR-213ENST00000560502 RGS18Q9NS28 235 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms