RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 CACTINQ8WUQ7 758 aaKnown RBP7.05□□□□□ -1.28
VPS13C-208ENST00000559119 DLG3Q92796 817 aa7.05□□□□□ -1.28
VPS13C-208ENST00000559119 ERCC4Q92889 916 aaPredicted RBP7.05□□□□□ -1.28
VPS13C-208ENST00000559119 TMEM176AQ96HP8 235 aa7.05□□□□□ -1.28
VPS13C-208ENST00000559119 TRIM8Q9BZR9 551 aa7.05□□□□□ -1.28
VPS13C-208ENST00000559119 PMS2P1A4D2B8 440 aa7.04□□□□□ -1.28
VPS13C-208ENST00000559119 RASSF10A6NK89 507 aa7.04□□□□□ -1.28
VPS13C-208ENST00000559119 CAPN14A8MX76 684 aa7.04□□□□□ -1.28
VPS13C-208ENST00000559119 GOLGA6L22H0YM25 854 aa7.04□□□□□ -1.28
VPS13C-208ENST00000559119 OVCH1Q7RTY7 1134 aa7.04□□□□□ -1.28
VPS13C-208ENST00000559119 THEMISQ8N1K5 641 aaPredicted RBP7.04□□□□□ -1.28
VPS13C-208ENST00000559119 SLC7A14Q8TBB6 771 aa7.04□□□□□ -1.28
VPS13C-208ENST00000559119 CHFRQ96EP1 664 aa7.04□□□□□ -1.28
VPS13C-208ENST00000559119 GIT1Q9Y2X7 761 aa7.04□□□□□ -1.28
VPS13C-208ENST00000559119 FAM221BA6H8Z2 402 aa7.03□□□□□ -1.28
VPS13C-208ENST00000559119 CYP27B1O15528 508 aa7.03□□□□□ -1.28
VPS13C-208ENST00000559119 NPTXRO95502 500 aa7.03□□□□□ -1.28
VPS13C-208ENST00000559119 SERINC3Q13530 473 aa7.03□□□□□ -1.28
VPS13C-208ENST00000559119 TUBA3CQ13748 450 aa7.03□□□□□ -1.28
VPS13C-208ENST00000559119 TRIM61Q5EBN2 209 aa7.03□□□□□ -1.28
VPS13C-208ENST00000559119 TUBA3EQ6PEY2 450 aa7.03□□□□□ -1.28
VPS13C-208ENST00000559119 AMER2Q8N7J2 671 aa7.03□□□□□ -1.28
VPS13C-208ENST00000559119 NEU4Q8WWR8 484 aaPredicted RBP7.03□□□□□ -1.28
VPS13C-208ENST00000559119 SNTG2Q9NY99 539 aa7.03□□□□□ -1.28
VPS13C-208ENST00000559119 VWA7Q9Y334 891 aa7.03□□□□□ -1.28
VPS13C-208ENST00000559119 CCDC163A0A0D9SF12 145 aa7.02□□□□□ -1.29
VPS13C-208ENST00000559119 IRF9Q00978 393 aa7.02□□□□□ -1.29
VPS13C-208ENST00000559119 ADAM15Q13444 863 aa7.02□□□□□ -1.29
VPS13C-208ENST00000559119 CATSPEREQ5SY80 951 aa7.02□□□□□ -1.29
VPS13C-208ENST00000559119 IGSF22Q8N9C0 903 aa7.02□□□□□ -1.29
VPS13C-208ENST00000559119 ZSWIM2Q8NEG5 633 aa7.02□□□□□ -1.29
VPS13C-208ENST00000559119 LPPQ93052 612 aa7.02□□□□□ -1.29
VPS13C-208ENST00000559119 SCLYQ96I15 445 aa7.02□□□□□ -1.29
VPS13C-208ENST00000559119 DNAJC7Q99615 494 aa7.02□□□□□ -1.29
VPS13C-208ENST00000559119 A0A1W2PRX2 142 aa7.01□□□□□ -1.29
VPS13C-208ENST00000559119 H2AFYO75367 372 aaKnown RBP7.01□□□□□ -1.29
VPS13C-208ENST00000559119 MAFO75444 373 aaPredicted RBP7.01□□□□□ -1.29
VPS13C-208ENST00000559119 ADH4P08319 380 aa7.01□□□□□ -1.29
VPS13C-208ENST00000559119 SESN2P58004 480 aaPredicted RBP7.01□□□□□ -1.29
VPS13C-208ENST00000559119 ALDH6A1Q02252 535 aaKnown RBP7.01□□□□□ -1.29
VPS13C-208ENST00000559119 DPTQ07507 201 aa7.01□□□□□ -1.29
VPS13C-208ENST00000559119 CRHR2Q13324 411 aa7.01□□□□□ -1.29
VPS13C-208ENST00000559119 RIN1Q13671 783 aa7.01□□□□□ -1.29
VPS13C-208ENST00000559119 TMEM177Q53S58 311 aa7.01□□□□□ -1.29
VPS13C-208ENST00000559119 KLHDC10Q6PID8 442 aa7.01□□□□□ -1.29
VPS13C-208ENST00000559119 BRAPQ7Z569 592 aa7.01□□□□□ -1.29
VPS13C-208ENST00000559119 ARMC5Q96C12 935 aa7.01□□□□□ -1.29
VPS13C-208ENST00000559119 SRPK1Q96SB4 655 aaKnown RBP7.01□□□□□ -1.29
VPS13C-208ENST00000559119 MPHOSPH9Q99550 1183 aa7.01□□□□□ -1.29
VPS13C-208ENST00000559119 MRPL4Q9BYD3 311 aaKnown RBP7.01□□□□□ -1.29
VPS13C-208ENST00000559119 ZNF703Q9H7S9 590 aaPredicted RBP7.01□□□□□ -1.29
VPS13C-208ENST00000559119 AGO3Q9H9G7 860 aaKnown RBP7.01□□□□□ -1.29
VPS13C-208ENST00000559119 C11orf21Q9P2W6 132 aa7.01□□□□□ -1.29
VPS13C-208ENST00000559119 SAE1Q9UBE0 346 aaPredicted RBP7.01□□□□□ -1.29
VPS13C-208ENST00000559119 TCRBV16S1A1N1A0A5B0 115 aa7□□□□□ -1.29
VPS13C-208ENST00000559119 MAKP20794 623 aa7□□□□□ -1.29
VPS13C-208ENST00000559119 PURAQ00577 322 aaKnown RBP7□□□□□ -1.29
VPS13C-208ENST00000559119 ZNF483Q8TF39 744 aaPredicted RBP7□□□□□ -1.29
VPS13C-208ENST00000559119 RABGGTAQ92696 567 aa7□□□□□ -1.29
VPS13C-208ENST00000559119 E2F7Q96AV8 911 aa7□□□□□ -1.29
VPS13C-208ENST00000559119 CEP89Q96ST8 783 aa7□□□□□ -1.29
VPS13C-208ENST00000559119 BOCQ9BWV1 1114 aa7□□□□□ -1.29
VPS13C-208ENST00000559119 MMRN2Q9H8L6 949 aa7□□□□□ -1.29
VPS13C-208ENST00000559119 PARPBPQ9NWS1 579 aa7□□□□□ -1.29
VPS13C-208ENST00000559119 CTDP1Q9Y5B0 961 aaPredicted RBP7□□□□□ -1.29
VPS13C-208ENST00000559119 KRT37O76014 449 aa6.99□□□□□ -1.29
VPS13C-208ENST00000559119 ATP2C1P98194 919 aaPredicted RBP6.99□□□□□ -1.29
VPS13C-208ENST00000559119 CC2D1AQ6P1N0 951 aaPredicted RBP6.99□□□□□ -1.29
VPS13C-208ENST00000559119 ABHD17CQ6PCB6 329 aa6.99□□□□□ -1.29
VPS13C-208ENST00000559119 FGD2Q7Z6J4 655 aa6.99□□□□□ -1.29
VPS13C-208ENST00000559119 TMPRSS6Q8IU80 811 aa6.99□□□□□ -1.29
VPS13C-208ENST00000559119 BCL6BQ8N143 479 aaPredicted RBP6.99□□□□□ -1.29
VPS13C-208ENST00000559119 ANKRD35Q8N283 1001 aa6.99□□□□□ -1.29
VPS13C-208ENST00000559119 THAP3Q8WTV1 239 aaPredicted RBP6.99□□□□□ -1.29
VPS13C-208ENST00000559119 SLC7A6OSQ96CW6 309 aaPredicted RBP6.99□□□□□ -1.29
VPS13C-208ENST00000559119 FOXB1Q99853 325 aa6.99□□□□□ -1.29
VPS13C-208ENST00000559119 IKZF4Q9H2S9 585 aa6.99□□□□□ -1.29
VPS13C-208ENST00000559119 REXO2Q9Y3B8 237 aaKnown RBP6.99□□□□□ -1.29
VPS13C-208ENST00000559119 KRTAP23-1A1A580 65 aa6.98□□□□□ -1.29
VPS13C-208ENST00000559119 KCNA6P17658 529 aa6.98□□□□□ -1.29
VPS13C-208ENST00000559119 STAT3P40763 770 aa6.98□□□□□ -1.29
VPS13C-208ENST00000559119 INHBCP55103 352 aa6.98□□□□□ -1.29
VPS13C-208ENST00000559119 ROM1Q03395 351 aa6.98□□□□□ -1.29
VPS13C-208ENST00000559119 RBL2Q08999 1139 aa6.98□□□□□ -1.29
VPS13C-208ENST00000559119 ARHGAP44Q17R89 818 aa6.98□□□□□ -1.29
VPS13C-208ENST00000559119 SPTY2D1Q68D10 685 aaPredicted RBP6.98□□□□□ -1.29
VPS13C-208ENST00000559119 RTN4RL1Q86UN2 441 aaPredicted RBP6.98□□□□□ -1.29
VPS13C-208ENST00000559119 GCDHQ92947 438 aaPredicted RBP6.98□□□□□ -1.29
VPS13C-208ENST00000559119 GFM2Q969S9 779 aaKnown RBP6.98□□□□□ -1.29
VPS13C-208ENST00000559119 FOXRED1Q96CU9 486 aaPredicted RBP6.98□□□□□ -1.29
VPS13C-208ENST00000559119 SLC6A15Q9H2J7 730 aa6.98□□□□□ -1.29
VPS13C-208ENST00000559119 CEP72Q9P209 647 aa6.98□□□□□ -1.29
VPS13C-208ENST00000559119 DENND2AQ9ULE3 1009 aa6.98□□□□□ -1.29
VPS13C-208ENST00000559119 SH3BP1Q9Y3L3 701 aa6.98□□□□□ -1.29
VPS13C-208ENST00000559119 GOLGA8BA8MQT2 603 aa6.97□□□□□ -1.29
VPS13C-208ENST00000559119 KCNQ2O43526 872 aa6.97□□□□□ -1.29
VPS13C-208ENST00000559119 ZBTB48P10074 688 aaPredicted RBP6.97□□□□□ -1.29
VPS13C-208ENST00000559119 ADCY7P51828 1080 aa6.97□□□□□ -1.29
VPS13C-208ENST00000559119 INHBEP58166 350 aa6.97□□□□□ -1.29
VPS13C-208ENST00000559119 SLC6A3Q01959 620 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms