RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 AFPP02771 609 aaKnown RBP28.92■■■□□ 2.22
CCDC88C-205ENST00000553403 COPB2P35606 906 aa28.92■■■□□ 2.22
CCDC88C-205ENST00000553403 HERVK_113P62684 666 aa28.92■■■□□ 2.22
CCDC88C-205ENST00000553403 KRT83P78385 493 aa28.92■■■□□ 2.22
CCDC88C-205ENST00000553403 MYBPC2Q14324 1141 aa28.92■■■□□ 2.22
CCDC88C-205ENST00000553403 EAPPQ56P03 285 aaPredicted RBP28.92■■■□□ 2.22
CCDC88C-205ENST00000553403 FASTKD5Q7L8L6 764 aaKnown RBP28.92■■■□□ 2.22
CCDC88C-205ENST00000553403 OTUD6AQ7L8S5 288 aa28.92■■■□□ 2.22
CCDC88C-205ENST00000553403 CCDC155Q8N6L0 562 aa28.92■■■□□ 2.22
CCDC88C-205ENST00000553403 SLC17A8Q8NDX2 589 aa28.92■■■□□ 2.22
CCDC88C-205ENST00000553403 ST6GALNAC4Q9H4F1 302 aa28.92■■■□□ 2.22
CCDC88C-205ENST00000553403 NHEJ1Q9H9Q4 299 aaPredicted RBP28.92■■■□□ 2.22
CCDC88C-205ENST00000553403 LZTFL1Q9NQ48 299 aa28.92■■■□□ 2.22
CCDC88C-205ENST00000553403 DMAC2Q9NW81 257 aa28.92■■■□□ 2.22
CCDC88C-205ENST00000553403 KIAA1217Q5T5P2 1943 aa28.91■■■□□ 2.22
CCDC88C-205ENST00000553403 KIF5CO60282 957 aa28.91■■■□□ 2.22
CCDC88C-205ENST00000553403 CNMDO75829 334 aa28.91■■■□□ 2.22
CCDC88C-205ENST00000553403 SLC25A27O95847 323 aa28.91■■■□□ 2.22
CCDC88C-205ENST00000553403 XRCC5P13010 732 aaKnown RBP28.91■■■□□ 2.22
CCDC88C-205ENST00000553403 ALDH5A1P51649 535 aaPredicted RBP28.91■■■□□ 2.22
CCDC88C-205ENST00000553403 ARHGAP29Q52LW3 1261 aa28.91■■■□□ 2.22
CCDC88C-205ENST00000553403 XKR9Q5GH70 373 aa28.91■■■□□ 2.22
CCDC88C-205ENST00000553403 CHADLQ6NUI6 762 aa28.91■■■□□ 2.22
CCDC88C-205ENST00000553403 PDXDC1Q6P996 788 aa28.91■■■□□ 2.22
CCDC88C-205ENST00000553403 ZNF662Q6ZS27 426 aa28.91■■■□□ 2.22
CCDC88C-205ENST00000553403 LSM14BQ9BX40 385 aaKnown RBP28.91■■■□□ 2.22
CCDC88C-205ENST00000553403 REXO2Q9Y3B8 237 aaKnown RBP28.91■■■□□ 2.22
CCDC88C-205ENST00000553403 EIF3CLB5ME19 914 aaKnown RBP28.9■■■□□ 2.22
CCDC88C-205ENST00000553403 K7ENM7 598 aa28.9■■■□□ 2.22
CCDC88C-205ENST00000553403 PSMC2P35998 433 aaKnown RBP28.9■■■□□ 2.22
CCDC88C-205ENST00000553403 CNTN2Q02246 1040 aa28.9■■■□□ 2.22
CCDC88C-205ENST00000553403 CACNA2D4Q7Z3S7 1137 aa28.9■■■□□ 2.22
CCDC88C-205ENST00000553403 SLC9A9Q8IVB4 645 aa28.9■■■□□ 2.22
CCDC88C-205ENST00000553403 OPTNQ96CV9 577 aa28.9■■■□□ 2.22
CCDC88C-205ENST00000553403 BORCS6Q96GS4 357 aa28.9■■■□□ 2.22
CCDC88C-205ENST00000553403 WDR24Q96S15 920 aa28.9■■■□□ 2.22
CCDC88C-205ENST00000553403 EIF3CQ99613 913 aaKnown RBP28.9■■■□□ 2.22
CCDC88C-205ENST00000553403 TMEM206Q9H813 350 aa28.9■■■□□ 2.22
CCDC88C-205ENST00000553403 AGPAT3Q9NRZ7 376 aa28.9■■■□□ 2.22
CCDC88C-205ENST00000553403 GABBR1Q9UBS5 961 aa28.9■■■□□ 2.22
CCDC88C-205ENST00000553403 CLEC11AQ9Y240 323 aa28.9■■■□□ 2.22
CCDC88C-205ENST00000553403 POTEB2H3BUK9 544 aa28.89■■■□□ 2.22
CCDC88C-205ENST00000553403 FANCGO15287 622 aa28.89■■■□□ 2.22
CCDC88C-205ENST00000553403 SLU7O95391 586 aaKnown RBP28.89■■■□□ 2.22
CCDC88C-205ENST00000553403 ARHGAP25P42331 645 aa28.89■■■□□ 2.22
CCDC88C-205ENST00000553403 MOGSQ13724 837 aa28.89■■■□□ 2.22
CCDC88C-205ENST00000553403 LDLRAD1Q5T700 205 aa28.89■■■□□ 2.22
CCDC88C-205ENST00000553403 RRAGAQ7L523 313 aa28.89■■■□□ 2.22
CCDC88C-205ENST00000553403 PNMA8AQ86V59 439 aaPredicted RBP28.89■■■□□ 2.22
CCDC88C-205ENST00000553403 NCAPG2Q86XI2 1143 aa28.89■■■□□ 2.22
CCDC88C-205ENST00000553403 TMEM174Q8WUU8 243 aa28.89■■■□□ 2.22
CCDC88C-205ENST00000553403 SYN2Q92777 582 aaPredicted RBP28.89■■■□□ 2.22
CCDC88C-205ENST00000553403 CGNQ9P2M7 1197 aaKnown RBP28.89■■■□□ 2.22
CCDC88C-205ENST00000553403 MYO1AQ9UBC5 1043 aa28.89■■■□□ 2.22
CCDC88C-205ENST00000553403 NOL4O94818 638 aa28.89■■■□□ 2.21
CCDC88C-205ENST00000553403 OSBPP22059 807 aa28.89■■■□□ 2.21
CCDC88C-205ENST00000553403 EDNRBP24530 442 aa28.89■■■□□ 2.21
CCDC88C-205ENST00000553403 CASP4P49662 377 aa28.89■■■□□ 2.21
CCDC88C-205ENST00000553403 ACTR2P61160 394 aa28.89■■■□□ 2.21
CCDC88C-205ENST00000553403 UTP14CQ5TAP6 766 aaKnown RBP28.89■■■□□ 2.21
CCDC88C-205ENST00000553403 MIS18BP1Q6P0N0 1132 aa28.89■■■□□ 2.21
CCDC88C-205ENST00000553403 ABHD15Q6UXT9 468 aa28.89■■■□□ 2.21
CCDC88C-205ENST00000553403 MAEAQ7L5Y9 396 aa28.89■■■□□ 2.21
CCDC88C-205ENST00000553403 ACCSQ96QU6 501 aa28.89■■■□□ 2.21
CCDC88C-205ENST00000553403 STBD1O95210 358 aa28.88■■■□□ 2.21
CCDC88C-205ENST00000553403 ANO5Q75V66 913 aa28.88■■■□□ 2.21
CCDC88C-205ENST00000553403 KSR1Q8IVT5 923 aa28.88■■■□□ 2.21
CCDC88C-205ENST00000553403 FAM186BQ8IYM0 893 aa28.88■■■□□ 2.21
CCDC88C-205ENST00000553403 PLCB1Q9NQ66 1216 aa28.88■■■□□ 2.21
CCDC88C-205ENST00000553403 A0A0U1RQJ8 604 aa28.87■■■□□ 2.21
CCDC88C-205ENST00000553403 UNCXA6NJT0 531 aa28.87■■■□□ 2.21
CCDC88C-205ENST00000553403 LRRC53A6NM62 1247 aa28.87■■■□□ 2.21
CCDC88C-205ENST00000553403 IPO7O95373 1038 aaKnown RBP28.87■■■□□ 2.21
CCDC88C-205ENST00000553403 PLA2G4FQ68DD2 849 aa28.87■■■□□ 2.21
CCDC88C-205ENST00000553403 SYCP3Q8IZU3 236 aa28.87■■■□□ 2.21
CCDC88C-205ENST00000553403 ATRIPQ8WXE1 791 aa28.87■■■□□ 2.21
CCDC88C-205ENST00000553403 ERO1AQ96HE7 468 aa28.87■■■□□ 2.21
CCDC88C-205ENST00000553403 PAGR1Q9BTK6 254 aa28.87■■■□□ 2.21
CCDC88C-205ENST00000553403 HAUS4Q9H6D7 363 aa28.87■■■□□ 2.21
CCDC88C-205ENST00000553403 TMEM150BA6NC51 233 aa28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 ZNF862O60290 1169 aa28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 PEX10O60683 326 aa28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 NPEPPSP55786 919 aa28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 SNRPFP62306 86 aaKnown RBP28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 GTF2BQ00403 316 aa28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 SWSAP1Q6NVH7 229 aa28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 FAM133AQ8N9E0 248 aa28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 SLC35C1Q96A29 364 aa28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 FRMD4BQ9Y2L6 1034 aa28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 GTPBP10A4D1E9 387 aaKnown RBP28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 SOWAHBA6NEL2 793 aa28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 URI1O94763 535 aaPredicted RBP28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 SUPT20HL2P0C7V6 817 aa28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 POTEJP0CG39 1038 aa28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 NCKAP1LP55160 1127 aa28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 HTRA3P83110 453 aa28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 C12orf56Q8IXR9 622 aa28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 CCDC42Q96M95 316 aa28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 GANQ9H2C0 597 aa28.86■■■□□ 2.21
CCDC88C-205ENST00000553403 ATG7O95352 703 aa28.85■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms