RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	ZSWIM4	Q9H7M6	989 aa		12.37	□□□□□ -0.43
DDB1-222	ENST00000543627	AGO3	Q9H9G7	860 aa	Known RBP	12.37	□□□□□ -0.43
DDB1-222	ENST00000543627	WRAP73	Q9P2S5	460 aa	Predicted RBP	12.37	□□□□□ -0.43
DDB1-222	ENST00000543627	TANC1	Q9C0D5	1861 aa		12.37	□□□□□ -0.43
DDB1-222	ENST00000543627	EVPL	Q92817	2033 aa		12.37	□□□□□ -0.43
DDB1-222	ENST00000543627	EFCAB14	O75071	495 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	SLITRK3	O94933	977 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	CA3	P07451	260 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	TRAPPC10	P48553	1259 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	TOB1	P50616	345 aa	Predicted RBP	12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	DRP2	Q13474	957 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	FOXD4L5	Q5VV16	416 aa	Predicted RBP	12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	GPR153	Q6NV75	609 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	TSHZ1	Q6ZSZ6	1077 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	ANO5	Q75V66	913 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	MAEA	Q7L5Y9	396 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	RHPN2	Q8IUC4	686 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	ERMN	Q8TAM6	284 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	PHOSPHO2	Q8TCD6	241 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	PIGO	Q8TEQ8	1089 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	MYLIP	Q8WY64	445 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	APBB2	Q92870	758 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	NIFK	Q9BYG3	293 aa	Known RBP	12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	TTYH1	Q9H313	450 aa	Predicted RBP	12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	CYP26B1	Q9NR63	512 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	MTMR10	Q9NXD2	777 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	SUCLA2	Q9P2R7	463 aa	Predicted RBP	12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	MTUS1	Q9ULD2	1270 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	PADI3	Q9ULW8	664 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	NOC2L	Q9Y3T9	749 aa	Known RBP	12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	PCDHA11	Q9Y5I1	949 aa		12.36	□□□□□ -0.43
DDB1-222	ENST00000543627	CSDE1	O75534	798 aa	Known RBP	12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	STBD1	O95210	358 aa		12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	PDC	P20941	246 aa		12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	FGFR4	P22455	802 aa		12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	IGFBP4	P22692	258 aa		12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	CRYBB1	P53674	252 aa	Predicted RBP	12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	SPIRE1	Q08AE8	756 aa		12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	GRIN2C	Q14957	1233 aa		12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	TARBP2	Q15633	366 aa	Known RBP	12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	RILPL1	Q5EBL4	403 aa		12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	DTHD1	Q6ZMT9	781 aa		12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	KSR1	Q8IVT5	923 aa		12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	C4orf19	Q8IY42	314 aa		12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	SLC7A3	Q8WY07	619 aa		12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	PPM1E	Q8WY54	764 aa		12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	TMEM143	Q96AN5	459 aa		12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	NLRP4	Q96MN2	994 aa		12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	YME1L1	Q96TA2	773 aa		12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	CDX2	Q99626	313 aa	Predicted RBP	12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	PRDM12	Q9H4Q4	367 aa		12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	LRWD1	Q9UFC0	647 aa		12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	ST3GAL5	Q9UNP4	418 aa		12.35	□□□□□ -0.43
DDB1-222	ENST00000543627	LOC101059915	A0A1B0GWI6	518 aa	Predicted RBP	12.34	□□□□□ -0.43
DDB1-222	ENST00000543627	DENND3	A2RUS2	1198 aa		12.34	□□□□□ -0.43
DDB1-222	ENST00000543627	LCHN	A4D1U4	455 aa		12.34	□□□□□ -0.43
DDB1-222	ENST00000543627	RFXAP	O00287	272 aa		12.34	□□□□□ -0.43
DDB1-222	ENST00000543627	ENPP3	O14638	875 aa		12.34	□□□□□ -0.43
DDB1-222	ENST00000543627	GPR182	O15218	404 aa		12.34	□□□□□ -0.43
DDB1-222	ENST00000543627	GPR32	O75388	356 aa		12.34	□□□□□ -0.43
DDB1-222	ENST00000543627	MAF	O75444	373 aa	Predicted RBP	12.34	□□□□□ -0.43
DDB1-222	ENST00000543627	MED24	O75448	989 aa		12.34	□□□□□ -0.43
DDB1-222	ENST00000543627	SRGAP2C	P0DJJ0	459 aa		12.34	□□□□□ -0.43
DDB1-222	ENST00000543627	CCT6A	P40227	531 aa	Known RBP	12.34	□□□□□ -0.43
DDB1-222	ENST00000543627	CEBPZ	Q03701	1054 aa	Known RBP	12.34	□□□□□ -0.43
DDB1-222	ENST00000543627	USP38	Q8NB14	1042 aa		12.34	□□□□□ -0.43
DDB1-222	ENST00000543627	TMEM40	Q8WWA1	233 aa		12.34	□□□□□ -0.43
DDB1-222	ENST00000543627	ARNTL2	Q8WYA1	636 aa		12.34	□□□□□ -0.43
DDB1-222	ENST00000543627	RAD9A	Q99638	391 aa		12.34	□□□□□ -0.43
DDB1-222	ENST00000543627	JPH2	Q9BR39	696 aa	Predicted RBP	12.34	□□□□□ -0.43
DDB1-222	ENST00000543627	LRFN2	Q9ULH4	789 aa		12.34	□□□□□ -0.43
DDB1-222	ENST00000543627		A0A087WZ62	844 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	USO1	O60763	962 aa	Known RBP	12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	GJB5	O95377	273 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	SYT1	P21579	422 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	CDC25A	P30304	524 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	GPC3	P51654	580 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	ORC2	Q13416	577 aa	Predicted RBP	12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	ODR4	Q5SWX8	454 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	POTEG	Q6S5H5	508 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	CATSPER3	Q86XQ3	398 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	MICALL1	Q8N3F8	863 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	C4orf32	Q8N8J7	132 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	NEK9	Q8TD19	979 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	SNX29	Q8TEQ0	813 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	GUCD1	Q96NT3	240 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	PLIN2	Q99541	437 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	MTR	Q99707	1265 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	ADAM2	Q99965	735 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	HSD17B14	Q9BPX1	270 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	FDXACB1	Q9BRP7	624 aa	Predicted RBP	12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	GCOM2	Q9BZD3	368 aa	Predicted RBP	12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	RAB34	Q9BZG1	259 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	EIF4ENIF1	Q9NRA8	985 aa	Known RBP	12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	WDR81	Q562E7	1941 aa		12.33	□□□□□ -0.44
DDB1-222	ENST00000543627	VWA3A	A6NCI4	1184 aa		12.32	□□□□□ -0.44
DDB1-222	ENST00000543627	PP2D1	A8MPX8	630 aa		12.32	□□□□□ -0.44
DDB1-222	ENST00000543627	FOSL2	P15408	326 aa		12.32	□□□□□ -0.44
DDB1-222	ENST00000543627	ZSCAN20	P17040	1043 aa	Predicted RBP	12.32	□□□□□ -0.44

Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms