RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 FAM184BQ9ULE4 1060 aa5.41□□□□□ -1.54
VPS13A-213ENST00000539950 M0R2C6 588 aa5.4□□□□□ -1.54
VPS13A-213ENST00000539950 CYR61O00622 381 aa5.4□□□□□ -1.54
VPS13A-213ENST00000539950 DVL2O14641 736 aa5.4□□□□□ -1.54
VPS13A-213ENST00000539950 PLD2O14939 933 aa5.4□□□□□ -1.54
VPS13A-213ENST00000539950 GLRX3O76003 335 aaKnown RBP5.4□□□□□ -1.54
VPS13A-213ENST00000539950 APEX1P27695 318 aaKnown RBP5.4□□□□□ -1.54
VPS13A-213ENST00000539950 MSX2P35548 267 aaPredicted RBP5.4□□□□□ -1.54
VPS13A-213ENST00000539950 RPS19P39019 145 aaKnown RBP5.4□□□□□ -1.54
VPS13A-213ENST00000539950 KLF10Q13118 480 aa5.4□□□□□ -1.54
VPS13A-213ENST00000539950 MIIPQ5JXC2 388 aa5.4□□□□□ -1.54
VPS13A-213ENST00000539950 IGFL4Q6B9Z1 124 aa5.4□□□□□ -1.54
VPS13A-213ENST00000539950 CC2D1AQ6P1N0 951 aaPredicted RBP5.4□□□□□ -1.54
VPS13A-213ENST00000539950 ZNF808Q8N4W9 903 aaPredicted RBP5.4□□□□□ -1.54
VPS13A-213ENST00000539950 CALML6Q8TD86 181 aa5.4□□□□□ -1.54
VPS13A-213ENST00000539950 ZNF503Q96F45 646 aa5.4□□□□□ -1.54
VPS13A-213ENST00000539950 MRIQ9BWK5 157 aa5.4□□□□□ -1.54
VPS13A-213ENST00000539950 ZNF341Q9BYN7 854 aa5.4□□□□□ -1.54
VPS13A-213ENST00000539950 OSBPL2Q9H1P3 480 aa5.4□□□□□ -1.54
VPS13A-213ENST00000539950 AGO3Q9H9G7 860 aaKnown RBP5.4□□□□□ -1.54
VPS13A-213ENST00000539950 PLA2G3Q9NZ20 509 aa5.4□□□□□ -1.54
VPS13A-213ENST00000539950 CDK11AQ9UQ88 783 aaPredicted RBP5.4□□□□□ -1.54
VPS13A-213ENST00000539950 NPIPB8E9PQR5 432 aa5.39□□□□□ -1.55
VPS13A-213ENST00000539950 HMGA2P52926 109 aa5.39□□□□□ -1.55
VPS13A-213ENST00000539950 DGCR2P98153 550 aa5.39□□□□□ -1.55
VPS13A-213ENST00000539950 ALDH6A1Q02252 535 aaKnown RBP5.39□□□□□ -1.55
VPS13A-213ENST00000539950 ADAM15Q13444 863 aa5.39□□□□□ -1.55
VPS13A-213ENST00000539950 SQSTM1Q13501 440 aa5.39□□□□□ -1.55
VPS13A-213ENST00000539950 ZCCHC8Q6NZY4 707 aaKnown RBP5.39□□□□□ -1.55
VPS13A-213ENST00000539950 USP51Q70EK9 711 aa5.39□□□□□ -1.55
VPS13A-213ENST00000539950 FAM89AQ96GI7 184 aa5.39□□□□□ -1.55
VPS13A-213ENST00000539950 FOXB1Q99853 325 aa5.39□□□□□ -1.55
VPS13A-213ENST00000539950 PCED1AQ9H1Q7 454 aa5.39□□□□□ -1.55
VPS13A-213ENST00000539950 SAMD15Q9P1V8 674 aa5.39□□□□□ -1.55
VPS13A-213ENST00000539950 MAGEL2Q9UJ55 1249 aa5.39□□□□□ -1.55
VPS13A-213ENST00000539950 SLC26A4O43511 780 aa5.38□□□□□ -1.55
VPS13A-213ENST00000539950 MAFO75444 373 aaPredicted RBP5.38□□□□□ -1.55
VPS13A-213ENST00000539950 DNAJC8O75937 253 aaPredicted RBP5.38□□□□□ -1.55
VPS13A-213ENST00000539950 IGFALSP35858 605 aa5.38□□□□□ -1.55
VPS13A-213ENST00000539950 STAT3P40763 770 aa5.38□□□□□ -1.55
VPS13A-213ENST00000539950 RGS3P49796 1198 aa5.38□□□□□ -1.55
VPS13A-213ENST00000539950 KIF11P52732 1056 aa5.38□□□□□ -1.55
VPS13A-213ENST00000539950 SAFB2Q14151 953 aaKnown RBP eCLIP5.38□□□□□ -1.55
VPS13A-213ENST00000539950 ZNF460Q14592 562 aa5.38□□□□□ -1.55
VPS13A-213ENST00000539950 BMS1Q14692 1282 aaKnown RBP5.38□□□□□ -1.55
VPS13A-213ENST00000539950 GRM7Q14831 915 aa5.38□□□□□ -1.55
VPS13A-213ENST00000539950 ACAP1Q15027 740 aa5.38□□□□□ -1.55
VPS13A-213ENST00000539950 DDX53Q86TM3 631 aaKnown RBP5.38□□□□□ -1.55
VPS13A-213ENST00000539950 SHCBP1Q8NEM2 672 aa5.38□□□□□ -1.55
VPS13A-213ENST00000539950 IL17DQ8TAD2 202 aa5.38□□□□□ -1.55
VPS13A-213ENST00000539950 TMEM176AQ96HP8 235 aa5.38□□□□□ -1.55
VPS13A-213ENST00000539950 KANSL2Q9H9L4 492 aa5.38□□□□□ -1.55
VPS13A-213ENST00000539950 TLR9Q9NR96 1032 aa5.38□□□□□ -1.55
VPS13A-213ENST00000539950 ING1Q9UK53 422 aaPredicted RBP5.38□□□□□ -1.55
VPS13A-213ENST00000539950 CTDP1Q9Y5B0 961 aaPredicted RBP5.38□□□□□ -1.55
VPS13A-213ENST00000539950 TNPO3Q9Y5L0 923 aaKnown RBP5.38□□□□□ -1.55
VPS13A-213ENST00000539950 TRAF5O00463 557 aa5.37□□□□□ -1.55
VPS13A-213ENST00000539950 PRLP01236 227 aa5.37□□□□□ -1.55
VPS13A-213ENST00000539950 FNTBP49356 437 aa5.37□□□□□ -1.55
VPS13A-213ENST00000539950 SLC6A3Q01959 620 aa5.37□□□□□ -1.55
VPS13A-213ENST00000539950 ARHGAP44Q17R89 818 aa5.37□□□□□ -1.55
VPS13A-213ENST00000539950 FNDC3BQ53EP0 1204 aaKnown RBP5.37□□□□□ -1.55
VPS13A-213ENST00000539950 C1orf210Q8IVY1 113 aa5.37□□□□□ -1.55
VPS13A-213ENST00000539950 CHST14Q8NCH0 376 aa5.37□□□□□ -1.55
VPS13A-213ENST00000539950 CSRNP2Q9H175 543 aa5.37□□□□□ -1.55
VPS13A-213ENST00000539950 NELFAQ9H3P2 528 aa5.37□□□□□ -1.55
VPS13A-213ENST00000539950 MSL2Q9HCI7 577 aa5.37□□□□□ -1.55
VPS13A-213ENST00000539950 HECAQ9UBI9 543 aaPredicted RBP5.37□□□□□ -1.55
VPS13A-213ENST00000539950 VWA7Q9Y334 891 aa5.37□□□□□ -1.55
VPS13A-213ENST00000539950 PTPDC1A2A3K4 754 aa5.36□□□□□ -1.55
VPS13A-213ENST00000539950 B4E1Z4 1266 aa5.36□□□□□ -1.55
VPS13A-213ENST00000539950 PPP1R12AO14974 1030 aaPredicted RBP5.36□□□□□ -1.55
VPS13A-213ENST00000539950 OPA1O60313 960 aa5.36□□□□□ -1.55
VPS13A-213ENST00000539950 ASLP04424 464 aa5.36□□□□□ -1.55
VPS13A-213ENST00000539950 C1SP09871 688 aa5.36□□□□□ -1.55
VPS13A-213ENST00000539950 ACRV1P26436 265 aa5.36□□□□□ -1.55
VPS13A-213ENST00000539950 HIBADHP31937 336 aaKnown RBP5.36□□□□□ -1.55
VPS13A-213ENST00000539950 ANTXR2P58335 489 aa5.36□□□□□ -1.55
VPS13A-213ENST00000539950 ATP2C1P98194 919 aaPredicted RBP5.36□□□□□ -1.55
VPS13A-213ENST00000539950 PTH1RQ03431 593 aa5.36□□□□□ -1.55
VPS13A-213ENST00000539950 MAP3K12Q12852 859 aa5.36□□□□□ -1.55
VPS13A-213ENST00000539950 PMS2P1A4D2B8 440 aa5.35□□□□□ -1.55
VPS13A-213ENST00000539950 SUV39H1O43463 412 aa5.35□□□□□ -1.55
VPS13A-213ENST00000539950 SDSP20132 328 aa5.35□□□□□ -1.55
VPS13A-213ENST00000539950 PTX3P26022 381 aaPredicted RBP5.35□□□□□ -1.55
VPS13A-213ENST00000539950 ADCY7P51828 1080 aa5.35□□□□□ -1.55
VPS13A-213ENST00000539950 ROM1Q03395 351 aa5.35□□□□□ -1.55
VPS13A-213ENST00000539950 RIN1Q13671 783 aa5.35□□□□□ -1.55
VPS13A-213ENST00000539950 NFE2L2Q16236 605 aa5.35□□□□□ -1.55
VPS13A-213ENST00000539950 PIK3R6Q5UE93 754 aa5.35□□□□□ -1.55
VPS13A-213ENST00000539950 SPTY2D1Q68D10 685 aaPredicted RBP5.35□□□□□ -1.55
VPS13A-213ENST00000539950 KLHDC10Q6PID8 442 aa5.35□□□□□ -1.55
VPS13A-213ENST00000539950 OR5AN1Q8NGI8 311 aa5.35□□□□□ -1.55
VPS13A-213ENST00000539950 SREK1Q8WXA9 508 aaKnown RBP5.35□□□□□ -1.55
VPS13A-213ENST00000539950 MAML3Q96JK9 1138 aa5.35□□□□□ -1.55
VPS13A-213ENST00000539950 PLEKHG4BQ96PX9 1271 aa5.35□□□□□ -1.55
VPS13A-213ENST00000539950 SAE1Q9UBE0 346 aaPredicted RBP5.35□□□□□ -1.55
VPS13A-213ENST00000539950 UBA6A0AVT1 1052 aaPredicted RBP5.34□□□□□ -1.55
VPS13A-213ENST00000539950 C2orf78A6NCI8 922 aa5.34□□□□□ -1.55
VPS13A-213ENST00000539950 NARSO43776 548 aaKnown RBP5.34□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms