RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 ANKARQ7Z5J8 1434 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 RIMS2Q9UQ26 1411 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 CASZ1Q86V15 1759 aa6.31□□□□□ -1.4
CD44-225ENST00000527326 ABCC1P33527 1531 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 QRICH2Q9H0J4 1663 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 LTBP4Q8N2S1 1624 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 LOC100996750A0A140TA64 210 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 ZNF233A6NK53 670 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 FAM196BA6NMK8 535 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 USP17L15C9J2P7 530 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 USP17L10C9JJH3 530 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 USP17L13C9JLJ4 530 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 USP17L12C9JPN9 530 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 USP17L11C9JVI0 530 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 USP17L21D6R901 530 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 USP17L18D6R9N7 530 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 USP17L22D6RA61 530 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 USP17L17D6RBQ6 530 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 USP17L19D6RCP7 530 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 USP17L20D6RJB6 530 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 GCOM1H8Y6P7 765 aaPredicted RBP6.3□□□□□ -1.4
CD44-225ENST00000527326 IGF2BP3O00425 579 aaKnown RBP eCLIP6.3□□□□□ -1.4
CD44-225ENST00000527326 C2CD2LO14523 706 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 STRNO43815 780 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 MFAP3LO75121 409 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 RAB11FIP3O75154 756 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 STAM2O75886 525 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 LDHAP00338 332 aaKnown RBP6.3□□□□□ -1.4
CD44-225ENST00000527326 MYZAPP0CAP1 466 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 HSPA8P11142 646 aaKnown RBP6.3□□□□□ -1.4
CD44-225ENST00000527326 MYCLP1P12525 358 aaPredicted RBP6.3□□□□□ -1.4
CD44-225ENST00000527326 PRLRP16471 622 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 POLR2EP19388 210 aaKnown RBP6.3□□□□□ -1.4
CD44-225ENST00000527326 KCNA3P22001 575 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 FGFR3P22607 806 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 SERPINB4P48594 390 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 RAD23BP54727 409 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 ADARP55265 1226 aaKnown RBP6.3□□□□□ -1.4
CD44-225ENST00000527326 SNRPNP63162 240 aaKnown RBP6.3□□□□□ -1.4
CD44-225ENST00000527326 CTBSQ01459 385 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 GUCY1B3Q02153 619 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 PPIDQ08752 370 aaKnown RBP6.3□□□□□ -1.4
CD44-225ENST00000527326 USP17L24Q0WX57 530 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 PTK7Q13308 1070 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 ITGA9Q13797 1035 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 CYLC2Q14093 348 aaPredicted RBP6.3□□□□□ -1.4
CD44-225ENST00000527326 MTF1Q14872 753 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 PARP6Q2NL67 630 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 MUM1Q2TAK8 710 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 SYDE2Q5VT97 1194 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 FOXB2Q5VYV0 432 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 C1orf229Q6ZS94 237 aaPredicted RBP6.3□□□□□ -1.4
CD44-225ENST00000527326 PHLDB2Q86SQ0 1253 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 C11orf74Q86VG3 221 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 RAB11FIP4Q86YS3 637 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 WDR75Q8IWA0 830 aaKnown RBP6.3□□□□□ -1.4
CD44-225ENST00000527326 SCUBE1Q8IWY4 988 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 ALDH16A1Q8IZ83 802 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 SPICE1Q8N0Z3 855 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 ASAP3Q8TDY4 903 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 EDARADDQ8WWZ3 215 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 CASP10Q92851 521 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 LRRC45Q96CN5 670 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 KLHL29Q96CT2 875 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 CTAGE1Q96RT6 745 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 SETDB2Q96T68 719 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 KRTAP4-6Q9BYQ5 205 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 FAM129AQ9BZQ8 928 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 TANGO6Q9C0B7 1094 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 DRC3Q9H069 523 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 ECT2Q9H8V3 914 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 PLCB1Q9NQ66 1216 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 INIPQ9NRY2 104 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 SAMSN1Q9NSI8 373 aaKnown RBP6.3□□□□□ -1.4
CD44-225ENST00000527326 FAIMQ9NVQ4 179 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 CYP39A1Q9NYL5 469 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 PTTG2Q9NZH5 202 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 MAGEC2Q9UBF1 373 aaPredicted RBP6.3□□□□□ -1.4
CD44-225ENST00000527326 TTC7AQ9ULT0 858 aaPredicted RBP6.3□□□□□ -1.4
CD44-225ENST00000527326 PRELID1Q9Y255 219 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 TROQ12816 1431 aaPredicted RBP6.3□□□□□ -1.4
CD44-225ENST00000527326 SAMD9LQ8IVG5 1584 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 UGGT1Q9NYU2 1555 aa6.3□□□□□ -1.4
CD44-225ENST00000527326 GPATCH8Q9UKJ3 1502 aaKnown RBP6.3□□□□□ -1.4
CD44-225ENST00000527326 ZMYM6O95789 1325 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 NEDD4P46934 1319 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 CAMSAP1Q5T5Y3 1602 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 A0A087WWV3 80 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 SMIM31A0A1B0GVY4 71 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 IQCA1LA6NCM1 817 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 SPECC1L-ADORA2AF8WAN1 911 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 MATN2O00339 956 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 O00370 1275 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 MSTNO14793 375 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 NDUFB5O43674 189 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 CBFA2T3O75081 653 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 TBCAO75347 108 aaKnown RBP6.29□□□□□ -1.4
CD44-225ENST00000527326 ATP5HO75947 161 aa6.29□□□□□ -1.4
CD44-225ENST00000527326 PARNO95453 639 aaKnown RBP6.29□□□□□ -1.4
CD44-225ENST00000527326 GNA14O95837 355 aa6.29□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms