RNA–Protein interactions for RNA: ENST00000493608.1

COL6A3-214, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 742 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-214ENST00000493608 MTHFD1LQ6UB35 978 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 ZNF516Q92618 1163 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 RAD9AQ99638 391 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 IFIH1Q9BYX4 1025 aaKnown RBP12.07□□□□□ -0.48
COL6A3-214ENST00000493608 TMEM134Q9H6X4 195 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 GABBR1Q9UBS5 961 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 TCEAL9Q9UHQ7 104 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 MTUS1Q9ULD2 1270 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 SAMM50Q9Y512 469 aa12.07□□□□□ -0.48
COL6A3-214ENST00000493608 CHMP2AO43633 222 aa12.06□□□□□ -0.48
COL6A3-214ENST00000493608 HBP1O60381 514 aa12.06□□□□□ -0.48
COL6A3-214ENST00000493608 CDKL5O76039 1030 aa12.06□□□□□ -0.48
COL6A3-214ENST00000493608 MRPS6P82932 125 aaKnown RBP12.06□□□□□ -0.48
COL6A3-214ENST00000493608 ANKRD1Q15327 319 aa12.06□□□□□ -0.48
COL6A3-214ENST00000493608 INF2Q27J81 1249 aa12.06□□□□□ -0.48
COL6A3-214ENST00000493608 ZNF746Q6NUN9 644 aaPredicted RBP12.06□□□□□ -0.48
COL6A3-214ENST00000493608 RPAINQ86UA6 219 aa12.06□□□□□ -0.48
COL6A3-214ENST00000493608 ATP8B4Q8TF62 1192 aa12.06□□□□□ -0.48
COL6A3-214ENST00000493608 TNPO1Q92973 898 aaKnown RBP12.06□□□□□ -0.48
COL6A3-214ENST00000493608 PHF20Q9BVI0 1012 aa12.06□□□□□ -0.48
COL6A3-214ENST00000493608 AGO3Q9H9G7 860 aaKnown RBP12.06□□□□□ -0.48
COL6A3-214ENST00000493608 ORC3Q9UBD5 711 aaPredicted RBP12.06□□□□□ -0.48
COL6A3-214ENST00000493608 PCDHA2Q9Y5H9 948 aa12.06□□□□□ -0.48
COL6A3-214ENST00000493608 PCDHA10Q9Y5I2 948 aa12.06□□□□□ -0.48
COL6A3-214ENST00000493608 LINC01553A4QN01 128 aa12.05□□□□□ -0.48
COL6A3-214ENST00000493608 GAS7O60861 476 aa12.05□□□□□ -0.48
COL6A3-214ENST00000493608 PSAPP07602 524 aa12.05□□□□□ -0.48
COL6A3-214ENST00000493608 FDPSP14324 419 aaKnown RBP12.05□□□□□ -0.48
COL6A3-214ENST00000493608 CD52P31358 61 aa12.05□□□□□ -0.48
COL6A3-214ENST00000493608 SLC26A2P50443 739 aa12.05□□□□□ -0.48
COL6A3-214ENST00000493608 KRT76Q01546 638 aa12.05□□□□□ -0.48
COL6A3-214ENST00000493608 NONOQ15233 471 aaKnown RBP eCLIP12.05□□□□□ -0.48
COL6A3-214ENST00000493608 FBXO47Q5MNV8 452 aa12.05□□□□□ -0.48
COL6A3-214ENST00000493608 LRCH2Q5VUJ6 765 aa12.05□□□□□ -0.48
COL6A3-214ENST00000493608 DAGLBQ8NCG7 672 aa12.05□□□□□ -0.48
COL6A3-214ENST00000493608 GDPD5Q8WTR4 605 aa12.05□□□□□ -0.48
COL6A3-214ENST00000493608 TOP1MTQ969P6 601 aa12.05□□□□□ -0.48
COL6A3-214ENST00000493608 PPP1R16BQ96T49 567 aa12.05□□□□□ -0.48
COL6A3-214ENST00000493608 UNC45AQ9H3U1 944 aa12.05□□□□□ -0.48
COL6A3-214ENST00000493608 GINS2Q9Y248 185 aa12.05□□□□□ -0.48
COL6A3-214ENST00000493608 SMIM35A0A1B0GVV1 85 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 RCCD1A6NED2 376 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 ZBTB42B2RXF5 422 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 ENPP3O14638 875 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 GPR37O15354 613 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 JAK2O60674 1132 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 IBSPP21815 317 aaPredicted RBP12.04□□□□□ -0.48
COL6A3-214ENST00000493608 GRB10Q13322 594 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 UGCGQ16739 394 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 LETM2Q2VYF4 491 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 Q4G0T1 1027 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 EARS2Q5JPH6 523 aaKnown RBP12.04□□□□□ -0.48
COL6A3-214ENST00000493608 IER5Q5VY09 327 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 GALNT17Q6IS24 598 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 SMAP1Q8IYB5 467 aaPredicted RBP12.04□□□□□ -0.48
COL6A3-214ENST00000493608 APBB2Q92870 758 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 SLC5A5Q92911 643 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 IL17RAQ96F46 866 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 CELF4Q9BZC1 486 aaKnown RBP12.04□□□□□ -0.48
COL6A3-214ENST00000493608 C22orf23Q9BZE7 217 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 DISC1Q9NRI5 854 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 INSL6Q9Y581 213 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 MAFBQ9Y5Q3 323 aaPredicted RBP12.04□□□□□ -0.48
COL6A3-214ENST00000493608 TRPV2Q9Y5S1 764 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 MTCH2Q9Y6C9 303 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 STK36Q9NRP7 1315 aa12.04□□□□□ -0.48
COL6A3-214ENST00000493608 SPTBN5Q9NRC6 3674 aaKnown RBP12.04□□□□□ -0.48
COL6A3-214ENST00000493608 TTC3P53804 2025 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 CYP3A7-CYP3A51PA0A087WV96 503 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 CCDC194A0A1B0GVG4 234 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 WDR64B1ANS9 1081 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 M0QZ92 97 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 SLC37A4O43826 429 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 ZNF862O60290 1169 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 PSMD10O75832 226 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 XBP1P17861 261 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 CYP3A7P24462 503 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 HTRA4P83105 476 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-214ENST00000493608 TMEM266Q2M3C6 531 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 ZNF484Q5JVG2 852 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 TSHZ1Q6ZSZ6 1077 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 PIK3AP1Q6ZUJ8 805 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 MIER3Q7Z3K6 550 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 KRT25Q7Z3Z0 450 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 RTN4RL1Q86UN2 441 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-214ENST00000493608 KIAA0319LQ8IZA0 1049 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 METTL13Q8N6R0 699 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 NSUN7Q8NE18 718 aaKnown RBP12.03□□□□□ -0.48
COL6A3-214ENST00000493608 GTF3C6Q969F1 213 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 TGS1Q96RS0 853 aaKnown RBP12.03□□□□□ -0.48
COL6A3-214ENST00000493608 YME1L1Q96TA2 773 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 RIT2Q99578 217 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 C17orf80Q9BSJ5 609 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 TEKT3Q9BXF9 490 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 COL25A1Q9BXS0 654 aaPredicted RBP12.03□□□□□ -0.48
COL6A3-214ENST00000493608 SUGCTQ9HAC7 445 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 DDX25Q9UHL0 483 aaKnown RBP12.03□□□□□ -0.48
COL6A3-214ENST00000493608 PADI3Q9ULW8 664 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 REV3LO60673 3130 aa12.03□□□□□ -0.48
COL6A3-214ENST00000493608 TCF20Q9UGU0 1960 aaKnown RBP12.03□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms