RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 ZBED1O96006 694 aa17.64■□□□□ 0.41
COL7A1-210ENST00000487017 KCNQ4P56696 695 aa17.64■□□□□ 0.41
COL7A1-210ENST00000487017 FOXO4P98177 505 aa17.64■□□□□ 0.41
COL7A1-210ENST00000487017 BEND6Q5SZJ8 279 aaPredicted RBP17.64■□□□□ 0.41
COL7A1-210ENST00000487017 SPECC1L-ADORA2AF8WAN1 911 aa17.64■□□□□ 0.41
COL7A1-210ENST00000487017 TTI1O43156 1089 aa17.64■□□□□ 0.41
COL7A1-210ENST00000487017 PRELPP51888 382 aa17.64■□□□□ 0.41
COL7A1-210ENST00000487017 RBM41Q96IZ5 413 aaKnown RBP17.64■□□□□ 0.41
COL7A1-210ENST00000487017 TAF1DQ9H5J8 278 aaPredicted RBP17.64■□□□□ 0.41
COL7A1-210ENST00000487017 MINPP1Q9UNW1 487 aa17.64■□□□□ 0.41
COL7A1-210ENST00000487017 TMTC4Q5T4D3 741 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 GPR101Q96P66 508 aaPredicted RBP17.63■□□□□ 0.41
COL7A1-210ENST00000487017 ESYT3A0FGR9 886 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 EIF2AK2P19525 551 aaKnown RBP17.63■□□□□ 0.41
COL7A1-210ENST00000487017 PSMA2P25787 234 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 SCARA5Q6ZMJ2 495 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 EFHD1Q9BUP0 239 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 ZWILCHQ9H900 591 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 FGFR1OP2Q9NVK5 253 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 MID2Q9UJV3 735 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 NUB1Q9Y5A7 615 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 CPDO75976 1380 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 SNAP23O00161 211 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 S100BP04271 92 aaPredicted RBP17.63■□□□□ 0.41
COL7A1-210ENST00000487017 MX2P20592 715 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 NR1H3Q13133 447 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 RNF168Q8IYW5 571 aaPredicted RBP17.63■□□□□ 0.41
COL7A1-210ENST00000487017 CHMP6Q96FZ7 201 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 BEGAINQ9BUH8 593 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 TMEM260Q9NX78 707 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 ADAM22Q9P0K1 906 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 PP2D1A8MPX8 630 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 LDHAP00338 332 aaKnown RBP17.63■□□□□ 0.41
COL7A1-210ENST00000487017 JAK3P52333 1124 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 MYO1EQ12965 1108 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 MTF1Q14872 753 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 XXYLT1Q8NBI6 393 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 FAM20AQ96MK3 541 aa17.63■□□□□ 0.41
COL7A1-210ENST00000487017 RNF17Q9BXT8 1623 aaKnown RBP17.63■□□□□ 0.41
COL7A1-210ENST00000487017 RASA4BC9J798 803 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 RASA4O43374 803 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 ARL4CP56559 192 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 NBPF9Q3BBW0 867 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 E4F1Q66K89 784 aaPredicted RBP17.62■□□□□ 0.41
COL7A1-210ENST00000487017 COG1Q8WTW3 980 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 TSPYL2Q9H2G4 693 aaPredicted RBP17.62■□□□□ 0.41
COL7A1-210ENST00000487017 POTEB3A0JP26 581 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 POTECB2RU33 542 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 K7ERI5 159 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 KCNB1Q14721 858 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 POTEBQ6S5H4 581 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 NLRP14Q86W24 1093 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 C7orf31Q8N865 590 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 ATP6V1G3Q96LB4 118 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 HEXIM2Q96MH2 286 aaKnown RBP17.62■□□□□ 0.41
COL7A1-210ENST00000487017 ISCA1Q9BUE6 129 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 ALKQ9UM73 1620 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 CHUKO15111 745 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 LMNAP02545 664 aaKnown RBP17.62■□□□□ 0.41
COL7A1-210ENST00000487017 PDXDC2PQ6P474 469 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 SYNE4Q8N205 404 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 SYT2Q8N9I0 419 aaPredicted RBP17.62■□□□□ 0.41
COL7A1-210ENST00000487017 DCPSQ96C86 337 aaKnown RBP17.62■□□□□ 0.41
COL7A1-210ENST00000487017 LIMA1Q9UHB6 759 aaKnown RBP17.62■□□□□ 0.41
COL7A1-210ENST00000487017 ZRANB2O95218 330 aaKnown RBP eCLIP17.62■□□□□ 0.41
COL7A1-210ENST00000487017 NCF2P19878 526 aaPredicted RBP17.62■□□□□ 0.41
COL7A1-210ENST00000487017 OSTNP61366 133 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 THOC5Q13769 683 aaKnown RBP17.62■□□□□ 0.41
COL7A1-210ENST00000487017 BBS5Q8N3I7 341 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 FAM193BQ96PV7 902 aaPredicted RBP17.62■□□□□ 0.41
COL7A1-210ENST00000487017 TRIM55Q9BYV6 548 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 DDX47Q9H0S4 455 aaKnown RBP17.62■□□□□ 0.41
COL7A1-210ENST00000487017 MAGED2Q9UNF1 606 aaPredicted RBP17.62■□□□□ 0.41
COL7A1-210ENST00000487017 ATP5HO75947 161 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 KRT37O76014 449 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 GCLMP48507 274 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 SULF1Q8IWU6 871 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 RUBCNQ92622 972 aa17.62■□□□□ 0.41
COL7A1-210ENST00000487017 UTYO14607 1347 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 A0A1B0GTH6 734 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 PDXDC1Q6P996 788 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP17.61■□□□□ 0.41
COL7A1-210ENST00000487017 USP17L15C9J2P7 530 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 USP17L13C9JLJ4 530 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 USP17L11C9JVI0 530 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 USP17L18D6R9N7 530 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 USP17L22D6RA61 530 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 USP17L17D6RBQ6 530 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 USP17L19D6RCP7 530 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 USP17L20D6RJB6 530 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 CHRNA3P32297 505 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 USP17L24Q0WX57 530 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 USP17L6PQ6QN14 398 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 HSPH1Q92598 858 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 SERPINI1Q99574 410 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 LCMT1Q9UIC8 334 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 PNPLA7Q6ZV29 1317 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 SPOPLQ6IQ16 392 aa17.61■□□□□ 0.41
COL7A1-210ENST00000487017 EPM2AIP1Q7L775 607 aaPredicted RBP17.61■□□□□ 0.41
COL7A1-210ENST00000487017 FAF2Q96CS3 445 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 14.9 ms