RNA–Protein interactions for RNA: ENST00000448078.1

USP49-205, Transcript of ubiquitin specific peptidase 49, humanhuman

TSL 3

Gene USP49, Length 480 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP49-205ENST00000448078 ZNF451Q9Y4E5 1061 aa7.36□□□□□ -1.23
USP49-205ENST00000448078 RIPOR2Q9Y4F9 1068 aa7.36□□□□□ -1.23
USP49-205ENST00000448078 ZNF804BA4D1E1 1349 aa7.35□□□□□ -1.23
USP49-205ENST00000448078 SMAD7O15105 426 aaKnown RBP7.35□□□□□ -1.23
USP49-205ENST00000448078 SGPL1O95470 568 aa7.35□□□□□ -1.23
USP49-205ENST00000448078 CD3EP07766 207 aa7.35□□□□□ -1.23
USP49-205ENST00000448078 NAT2P11245 290 aa7.35□□□□□ -1.23
USP49-205ENST00000448078 BMP8BP34820 402 aa7.35□□□□□ -1.23
USP49-205ENST00000448078 CFAP100Q494V2 611 aa7.35□□□□□ -1.23
USP49-205ENST00000448078 TNNI3KQ59H18 835 aa7.35□□□□□ -1.23
USP49-205ENST00000448078 ZPBP2Q6X784 338 aa7.35□□□□□ -1.23
USP49-205ENST00000448078 ZNF804AQ7Z570 1209 aa7.35□□□□□ -1.23
USP49-205ENST00000448078 NECAB2Q7Z6G3 386 aa7.35□□□□□ -1.23
USP49-205ENST00000448078 ERO1BQ86YB8 467 aa7.35□□□□□ -1.23
USP49-205ENST00000448078 JAMLQ86YT9 394 aa7.35□□□□□ -1.23
USP49-205ENST00000448078 MYD88Q99836 296 aa7.35□□□□□ -1.23
USP49-205ENST00000448078 MXD3Q9BW11 206 aa7.35□□□□□ -1.23
USP49-205ENST00000448078 C19orf73Q9NVV2 129 aa7.35□□□□□ -1.23
USP49-205ENST00000448078 TMOD2Q9NZR1 351 aa7.35□□□□□ -1.23
USP49-205ENST00000448078 MKI67P46013 3256 aaKnown RBP7.34□□□□□ -1.23
USP49-205ENST00000448078 CLRN2A0PK11 232 aa7.34□□□□□ -1.23
USP49-205ENST00000448078 F8W031 263 aaPredicted RBP7.34□□□□□ -1.23
USP49-205ENST00000448078 H0Y8X5 98 aa7.34□□□□□ -1.23
USP49-205ENST00000448078 DDAH1O94760 285 aa7.34□□□□□ -1.23
USP49-205ENST00000448078 HPXP02790 462 aa7.34□□□□□ -1.23
USP49-205ENST00000448078 ZNF445P59923 1031 aa7.34□□□□□ -1.23
USP49-205ENST00000448078 FKBP1AP62942 108 aaKnown RBP7.34□□□□□ -1.23
USP49-205ENST00000448078 POU4F1Q01851 419 aa7.34□□□□□ -1.23
USP49-205ENST00000448078 OGFOD2Q6N063 350 aa7.34□□□□□ -1.23
USP49-205ENST00000448078 LILRA2Q8N149 483 aa7.34□□□□□ -1.23
USP49-205ENST00000448078 U2AF1L4Q8WU68 220 aaKnown RBP7.34□□□□□ -1.23
USP49-205ENST00000448078 BRI3BPQ8WY22 251 aa7.34□□□□□ -1.23
USP49-205ENST00000448078 ZBED3Q96IU2 234 aaPredicted RBP7.34□□□□□ -1.23
USP49-205ENST00000448078 NSUN3Q9H649 340 aaKnown RBP7.34□□□□□ -1.23
USP49-205ENST00000448078 AP5S1Q9NUS5 200 aa7.34□□□□□ -1.23
USP49-205ENST00000448078 PRR13Q9NZ81 148 aa7.34□□□□□ -1.23
USP49-205ENST00000448078 WHRNQ9P202 907 aa7.34□□□□□ -1.23
USP49-205ENST00000448078 LRP2BPQ9P2M1 347 aa7.34□□□□□ -1.23
USP49-205ENST00000448078 FZD1Q9UP38 647 aa7.34□□□□□ -1.23
USP49-205ENST00000448078 FHOD1Q9Y613 1164 aa7.34□□□□□ -1.23
USP49-205ENST00000448078 TAF6LQ9Y6J9 622 aa7.34□□□□□ -1.23
USP49-205ENST00000448078 ANKRD36CQ5JPF3 1778 aa7.33□□□□□ -1.24
USP49-205ENST00000448078 MYPNQ86TC9 1320 aa7.33□□□□□ -1.24
USP49-205ENST00000448078 COL3A1P02461 1466 aaPredicted RBP7.33□□□□□ -1.24
USP49-205ENST00000448078 A0A1W2PQJ5 194 aa7.33□□□□□ -1.24
USP49-205ENST00000448078 CHL1O00533 1208 aa7.33□□□□□ -1.24
USP49-205ENST00000448078 EPHX1P07099 455 aa7.33□□□□□ -1.24
USP49-205ENST00000448078 VAV1P15498 845 aa7.33□□□□□ -1.24
USP49-205ENST00000448078 CTSWP56202 376 aa7.33□□□□□ -1.24
USP49-205ENST00000448078 CALD1Q05682 793 aaKnown RBP7.33□□□□□ -1.24
USP49-205ENST00000448078 LRIT3Q3SXY7 679 aa7.33□□□□□ -1.24
USP49-205ENST00000448078 ANKRD39Q53RE8 183 aa7.33□□□□□ -1.24
USP49-205ENST00000448078 FAM43AQ8N2R8 423 aa7.33□□□□□ -1.24
USP49-205ENST00000448078 FAM169BQ8N8A8 192 aa7.33□□□□□ -1.24
USP49-205ENST00000448078 MAP6Q96JE9 813 aa7.33□□□□□ -1.24
USP49-205ENST00000448078 FCRL2Q96LA5 508 aaPredicted RBP7.33□□□□□ -1.24
USP49-205ENST00000448078 PRMT6Q96LA8 375 aaPredicted RBP7.33□□□□□ -1.24
USP49-205ENST00000448078 PLEKHF1Q96S99 279 aa7.33□□□□□ -1.24
USP49-205ENST00000448078 RNF32Q9H0A6 362 aa7.33□□□□□ -1.24
USP49-205ENST00000448078 PRO3102Q9H379 93 aa7.33□□□□□ -1.24
USP49-205ENST00000448078 CD209Q9NNX6 404 aa7.33□□□□□ -1.24
USP49-205ENST00000448078 NOP56O00567 594 aaKnown RBP7.32□□□□□ -1.24
USP49-205ENST00000448078 CTSKP43235 329 aa7.32□□□□□ -1.24
USP49-205ENST00000448078 GALK1P51570 392 aa7.32□□□□□ -1.24
USP49-205ENST00000448078 RTP1P59025 263 aa7.32□□□□□ -1.24
USP49-205ENST00000448078 PPATQ06203 517 aa7.32□□□□□ -1.24
USP49-205ENST00000448078 NCAPHQ15003 741 aa7.32□□□□□ -1.24
USP49-205ENST00000448078 DPY19L1Q2PZI1 675 aa7.32□□□□□ -1.24
USP49-205ENST00000448078 TTLL11Q8NHH1 800 aa7.32□□□□□ -1.24
USP49-205ENST00000448078 PARK7Q99497 189 aaKnown RBP7.32□□□□□ -1.24
USP49-205ENST00000448078 APBA2Q99767 749 aa7.32□□□□□ -1.24
USP49-205ENST00000448078 SLC6A17Q9H1V8 727 aa7.32□□□□□ -1.24
USP49-205ENST00000448078 EPB41L4BQ9H329 900 aa7.32□□□□□ -1.24
USP49-205ENST00000448078 DCP1AQ9NPI6 582 aaPredicted RBP7.32□□□□□ -1.24
USP49-205ENST00000448078 MTMR10Q9NXD2 777 aa7.32□□□□□ -1.24
USP49-205ENST00000448078 ZNF70Q9UC06 446 aaPredicted RBP7.32□□□□□ -1.24
USP49-205ENST00000448078 GPR55Q9Y2T6 319 aaPredicted RBP7.32□□□□□ -1.24
USP49-205ENST00000448078 ANKRD18BA2A2Z9 1011 aa7.31□□□□□ -1.24
USP49-205ENST00000448078 BTBD19C9JJ37 291 aa7.31□□□□□ -1.24
USP49-205ENST00000448078 PDHXO00330 501 aa7.31□□□□□ -1.24
USP49-205ENST00000448078 SHOXO15266 292 aa7.31□□□□□ -1.24
USP49-205ENST00000448078 ADCY3O60266 1144 aa7.31□□□□□ -1.24
USP49-205ENST00000448078 FRAT2O75474 233 aaPredicted RBP7.31□□□□□ -1.24
USP49-205ENST00000448078 ZNF205O95201 554 aa7.31□□□□□ -1.24
USP49-205ENST00000448078 TMPOP42166 694 aaKnown RBP7.31□□□□□ -1.24
USP49-205ENST00000448078 CASP7P55210 303 aa7.31□□□□□ -1.24
USP49-205ENST00000448078 PPIL2Q13356 520 aa7.31□□□□□ -1.24
USP49-205ENST00000448078 VGLL4Q14135 290 aa7.31□□□□□ -1.24
USP49-205ENST00000448078 FXNQ16595 210 aa7.31□□□□□ -1.24
USP49-205ENST00000448078 ZNF648Q5T619 568 aaPredicted RBP7.31□□□□□ -1.24
USP49-205ENST00000448078 C17orf99Q6UX52 265 aa7.31□□□□□ -1.24
USP49-205ENST00000448078 PRR23BQ6ZRT6 265 aa7.31□□□□□ -1.24
USP49-205ENST00000448078 ANKRD23Q86SG2 305 aa7.31□□□□□ -1.24
USP49-205ENST00000448078 TDHQ8IZJ6 230 aa7.31□□□□□ -1.24
USP49-205ENST00000448078 CRACR2BQ8N4Y2 399 aaPredicted RBP7.31□□□□□ -1.24
USP49-205ENST00000448078 COA7Q96BR5 231 aa7.31□□□□□ -1.24
USP49-205ENST00000448078 DEFB118Q96PH6 123 aa7.31□□□□□ -1.24
USP49-205ENST00000448078 LBHD1Q9BQE6 289 aaPredicted RBP7.31□□□□□ -1.24
USP49-205ENST00000448078 TINF2Q9BSI4 451 aa7.31□□□□□ -1.24
USP49-205ENST00000448078 ARHGAP39Q9C0H5 1083 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms