RNA–Protein interactions for RNA: ENST00000431146.6

USHBP1-203, Transcript of USH1 protein network component harmonin binding protein 1, humanhuman

TSL 2 BASIC

Gene USHBP1, Length 2,136 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1-203ENST00000431146 NEK11Q8NG66 645 aa18.32■□□□□ 0.52
USHBP1-203ENST00000431146 IWS1Q96ST2 819 aa18.32■□□□□ 0.52
USHBP1-203ENST00000431146 SENP7Q9BQF6 1050 aa18.32■□□□□ 0.52
USHBP1-203ENST00000431146 RBPJLQ9UBG7 517 aa18.32■□□□□ 0.52
USHBP1-203ENST00000431146 EPN1Q9Y6I3 576 aaPredicted RBP18.32■□□□□ 0.52
USHBP1-203ENST00000431146 GOLGA6L9A6NEM1 432 aa18.32■□□□□ 0.52
USHBP1-203ENST00000431146 NDUFA10O95299 355 aa18.32■□□□□ 0.52
USHBP1-203ENST00000431146 PLEKP08567 350 aaPredicted RBP18.32■□□□□ 0.52
USHBP1-203ENST00000431146 CYP2J2P51589 502 aa18.32■□□□□ 0.52
USHBP1-203ENST00000431146 MKRN3Q13064 507 aaKnown RBP18.32■□□□□ 0.52
USHBP1-203ENST00000431146 FAM102BQ5T8I3 360 aa18.32■□□□□ 0.52
USHBP1-203ENST00000431146 TCERG1LQ5VWI1 586 aa18.32■□□□□ 0.52
USHBP1-203ENST00000431146 GPAT2Q6NUI2 795 aa18.32■□□□□ 0.52
USHBP1-203ENST00000431146 RRAGAQ7L523 313 aa18.32■□□□□ 0.52
USHBP1-203ENST00000431146 ZNF526Q8TF50 670 aaPredicted RBP18.32■□□□□ 0.52
USHBP1-203ENST00000431146 CDHR1Q96JP9 859 aa18.32■□□□□ 0.52
USHBP1-203ENST00000431146 LSM14BQ9BX40 385 aaKnown RBP18.32■□□□□ 0.52
USHBP1-203ENST00000431146 NLRC4Q9NPP4 1024 aa18.32■□□□□ 0.52
USHBP1-203ENST00000431146 REXO2Q9Y3B8 237 aaKnown RBP18.32■□□□□ 0.52
USHBP1-203ENST00000431146 PCNTO95613 3336 aa18.32■□□□□ 0.52
USHBP1-203ENST00000431146 NFASCO94856 1347 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 TISP43B9A030 160 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 EIF3JO75822 258 aaKnown RBP18.31■□□□□ 0.52
USHBP1-203ENST00000431146 STAM2O75886 525 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 RPL13P26373 211 aaKnown RBP18.31■□□□□ 0.52
USHBP1-203ENST00000431146 GTF2F1P35269 517 aaKnown RBP eCLIP18.31■□□□□ 0.52
USHBP1-203ENST00000431146 FRMD5Q7Z6J6 570 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 SMAP1Q8IYB5 467 aaPredicted RBP18.31■□□□□ 0.52
USHBP1-203ENST00000431146 ZNHIT6Q9NWK9 470 aaKnown RBP18.31■□□□□ 0.52
USHBP1-203ENST00000431146 LARSQ9P2J5 1176 aaKnown RBP18.31■□□□□ 0.52
USHBP1-203ENST00000431146 TFR2Q9UP52 801 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 ARID2Q68CP9 1835 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 LRRC53A6NM62 1247 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 PPP1R37O75864 691 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 NOL4O94818 638 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 PSAPP07602 524 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 EPB41P11171 864 aaKnown RBP18.31■□□□□ 0.52
USHBP1-203ENST00000431146 PEX3P56589 373 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 LDLRAD1Q5T700 205 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 WDR78Q5VTH9 848 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 STXBP4Q6ZWJ1 553 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 PNMA8AQ86V59 439 aaPredicted RBP18.31■□□□□ 0.52
USHBP1-203ENST00000431146 SYCP3Q8IZU3 236 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 RDM1Q8NG50 284 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 IPO4Q8TEX9 1081 aaKnown RBP18.31■□□□□ 0.52
USHBP1-203ENST00000431146 SLC10A4Q96EP9 437 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 STRA6Q9BX79 667 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 GBP3Q9H0R5 595 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 NHEJ1Q9H9Q4 299 aaPredicted RBP18.31■□□□□ 0.52
USHBP1-203ENST00000431146 AGPAT3Q9NRZ7 376 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 FAM184BQ9ULE4 1060 aa18.31■□□□□ 0.52
USHBP1-203ENST00000431146 CYP2C8P10632 490 aa18.3■□□□□ 0.52
USHBP1-203ENST00000431146 PLS3P13797 630 aa18.3■□□□□ 0.52
USHBP1-203ENST00000431146 ABHD15Q6UXT9 468 aa18.3■□□□□ 0.52
USHBP1-203ENST00000431146 BAP1Q92560 729 aa18.3■□□□□ 0.52
USHBP1-203ENST00000431146 CEP170P1Q96L14 293 aa18.3■□□□□ 0.52
USHBP1-203ENST00000431146 ANKEF1Q9NU02 776 aa18.3■□□□□ 0.52
USHBP1-203ENST00000431146 MCM3APO60318 1980 aa18.3■□□□□ 0.52
USHBP1-203ENST00000431146 PHLPP2Q6ZVD8 1323 aa18.3■□□□□ 0.52
USHBP1-203ENST00000431146 ZC3H4Q9UPT8 1303 aaKnown RBP18.3■□□□□ 0.52
USHBP1-203ENST00000431146 SLC16A4O15374 487 aa18.29■□□□□ 0.52
USHBP1-203ENST00000431146 STBD1O95210 358 aa18.29■□□□□ 0.52
USHBP1-203ENST00000431146 XRCC5P13010 732 aaKnown RBP18.29■□□□□ 0.52
USHBP1-203ENST00000431146 PRKCEQ02156 737 aa18.29■□□□□ 0.52
USHBP1-203ENST00000431146 FASTKD5Q7L8L6 764 aaKnown RBP18.29■□□□□ 0.52
USHBP1-203ENST00000431146 HS2ST1Q7LGA3 356 aa18.29■□□□□ 0.52
USHBP1-203ENST00000431146 CACNA2D4Q7Z3S7 1137 aa18.29■□□□□ 0.52
USHBP1-203ENST00000431146 ATP6V0A1Q93050 837 aa18.29■□□□□ 0.52
USHBP1-203ENST00000431146 KIFC3Q9BVG8 833 aa18.29■□□□□ 0.52
USHBP1-203ENST00000431146 TRIM10Q9UDY6 481 aa18.29■□□□□ 0.52
USHBP1-203ENST00000431146 SEPT9Q9UHD8 586 aaPredicted RBP18.29■□□□□ 0.52
USHBP1-203ENST00000431146 UBE4BO95155 1302 aa18.29■□□□□ 0.52
USHBP1-203ENST00000431146 ZNFX1Q9P2E3 1918 aaKnown RBP18.29■□□□□ 0.52
USHBP1-203ENST00000431146 DYNC1I1O14576 645 aa18.29■□□□□ 0.52
USHBP1-203ENST00000431146 ACTN1P12814 892 aa18.29■□□□□ 0.52
USHBP1-203ENST00000431146 POLR2FP61218 127 aaKnown RBP18.29■□□□□ 0.52
USHBP1-203ENST00000431146 NAA30Q147X3 362 aaPredicted RBP18.29■□□□□ 0.52
USHBP1-203ENST00000431146 ARHGAP29Q52LW3 1261 aa18.29■□□□□ 0.52
USHBP1-203ENST00000431146 FAM186BQ8IYM0 893 aa18.29■□□□□ 0.52
USHBP1-203ENST00000431146 FAM133AQ8N9E0 248 aa18.29■□□□□ 0.52
USHBP1-203ENST00000431146 DRC1Q96MC2 740 aa18.29■□□□□ 0.52
USHBP1-203ENST00000431146 PLAGL2Q9UPG8 496 aa18.29■□□□□ 0.52
USHBP1-203ENST00000431146 SLC16A3O15427 465 aaKnown RBP18.28■□□□□ 0.52
USHBP1-203ENST00000431146 GRIN3BO60391 1043 aa18.28■□□□□ 0.52
USHBP1-203ENST00000431146 AFPP02771 609 aaKnown RBP18.28■□□□□ 0.52
USHBP1-203ENST00000431146 OSBPP22059 807 aa18.28■□□□□ 0.52
USHBP1-203ENST00000431146 RDH13Q8NBN7 331 aa18.28■□□□□ 0.52
USHBP1-203ENST00000431146 BBXQ8WY36 941 aaPredicted RBP18.28■□□□□ 0.52
USHBP1-203ENST00000431146 SLC35C1Q96A29 364 aa18.28■□□□□ 0.52
USHBP1-203ENST00000431146 MAF1Q9H063 256 aa18.28■□□□□ 0.52
USHBP1-203ENST00000431146 PCIF1Q9H4Z3 704 aa18.28■□□□□ 0.52
USHBP1-203ENST00000431146 ARHGAP20Q9P2F6 1191 aa18.28■□□□□ 0.52
USHBP1-203ENST00000431146 TUBB4AP04350 444 aa18.28■□□□□ 0.52
USHBP1-203ENST00000431146 SUPT20HL2P0C7V6 817 aa18.28■□□□□ 0.52
USHBP1-203ENST00000431146 SLC9A1P19634 815 aa18.28■□□□□ 0.52
USHBP1-203ENST00000431146 UBA1P22314 1058 aaKnown RBP18.28■□□□□ 0.52
USHBP1-203ENST00000431146 ICAM3P32942 547 aa18.28■□□□□ 0.52
USHBP1-203ENST00000431146 ARHGAP25P42331 645 aa18.28■□□□□ 0.52
USHBP1-203ENST00000431146 SNAPC2Q13487 334 aa18.28■□□□□ 0.52
USHBP1-203ENST00000431146 MIS18BP1Q6P0N0 1132 aa18.28■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms