RNA–Protein interactions for RNA: ENST00000430711.5

COL28A1-202, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 5

Gene COL28A1, Length 2,323 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-202ENST00000430711 HSF2BPO75031 334 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 EPB41P11171 864 aaKnown RBP7.85□□□□□ -1.15
COL28A1-202ENST00000430711 NR1D1P20393 614 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 ABCB4P21439 1286 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 TNFRSF8P28908 595 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 PAFAH1B1P43034 410 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 FNTAP49354 379 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 CFAP58Q5T655 872 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 TCERG1LQ5VWI1 586 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 GLYCTKQ8IVS8 523 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 TPCN2Q8NHX9 752 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 MDM1Q8TC05 714 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 ATP8B4Q8TF62 1192 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 SCFD2Q8WU76 684 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 TSG101Q99816 390 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 WDR18Q9BV38 432 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 BHMT2Q9H2M3 363 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 STK32BQ9NY57 414 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 FBXL5Q9UKA1 691 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 STXBP5LQ9Y2K9 1186 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 ABCB11O95342 1321 aa7.85□□□□□ -1.15
COL28A1-202ENST00000430711 ZNFX1Q9P2E3 1918 aaKnown RBP7.85□□□□□ -1.15
COL28A1-202ENST00000430711 LRRC37AA6NMS7 1700 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 COL11A2P13942 1736 aaPredicted RBP7.84□□□□□ -1.15
COL28A1-202ENST00000430711 A0A1W2PRG0 241 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 GOLGA8KD6RF30 607 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 NDUFAB1O14561 156 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 MSH4O15457 936 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 SART1O43290 800 aaKnown RBP7.84□□□□□ -1.15
COL28A1-202ENST00000430711 MARSP56192 900 aaKnown RBP7.84□□□□□ -1.15
COL28A1-202ENST00000430711 JAM2P57087 298 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 ARHGAP4P98171 946 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 HLTFQ14527 1009 aaKnown RBP eCLIP7.84□□□□□ -1.15
COL28A1-202ENST00000430711 PTGISQ16647 500 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 C15orf52Q6ZUT6 534 aaKnown RBP7.84□□□□□ -1.15
COL28A1-202ENST00000430711 MAATS1Q7Z4T9 603 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 UHMK1Q8TAS1 419 aaKnown RBP7.84□□□□□ -1.15
COL28A1-202ENST00000430711 ZNF473Q8WTR7 871 aaKnown RBP7.84□□□□□ -1.15
COL28A1-202ENST00000430711 U2AF1L4Q8WU68 220 aaKnown RBP7.84□□□□□ -1.15
COL28A1-202ENST00000430711 SLC20A1Q8WUM9 679 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 GLG1Q92896 1179 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 EPB41L4BQ9H329 900 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 PPANQ9NQ55 473 aaKnown RBP7.84□□□□□ -1.15
COL28A1-202ENST00000430711 BMP2KQ9NSY1 1161 aaPredicted RBP7.84□□□□□ -1.15
COL28A1-202ENST00000430711 FAM198AQ9UFP1 575 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 VAV3Q9UKW4 847 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 SCAF8Q9UPN6 1271 aaKnown RBP7.84□□□□□ -1.15
COL28A1-202ENST00000430711 TCRBV7S2A1N4TA0A589 114 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 TMEM150BA6NC51 233 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 BHMG1C9JSJ3 638 aaPredicted RBP7.84□□□□□ -1.15
COL28A1-202ENST00000430711 ATMINO43313 823 aaPredicted RBP7.84□□□□□ -1.15
COL28A1-202ENST00000430711 BUB1BO60566 1050 aaPredicted RBP7.84□□□□□ -1.15
COL28A1-202ENST00000430711 KRT18P05783 430 aaKnown RBP7.84□□□□□ -1.15
COL28A1-202ENST00000430711 MCM3P25205 808 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 USP11P51784 963 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 DLG4P78352 724 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 DHX9Q08211 1270 aaKnown RBP7.84□□□□□ -1.15
COL28A1-202ENST00000430711 PLS1Q14651 629 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 ALKBH5Q6P6C2 394 aaKnown RBP7.84□□□□□ -1.15
COL28A1-202ENST00000430711 KDM7AQ6ZMT4 941 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 KIAA0825Q8IV33 1275 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 RNF10Q8N5U6 811 aaKnown RBP7.84□□□□□ -1.15
COL28A1-202ENST00000430711 MYCBPAPQ8TBZ2 947 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 ALG3Q92685 438 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 KAT5Q92993 513 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 BORCS6Q96GS4 357 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 FIZ1Q96SL8 496 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 TMOD4Q9NZQ9 345 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 GCNT4Q9P109 453 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 MYO3BQ8WXR4 1341 aa7.84□□□□□ -1.15
COL28A1-202ENST00000430711 ANKRD63C9JTQ0 380 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 ZNF646O15015 1829 aaPredicted RBP7.83□□□□□ -1.16
COL28A1-202ENST00000430711 GCNT3O95395 438 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 CPP00450 1065 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 NR3C1P04150 777 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 IBSPP21815 317 aaPredicted RBP7.83□□□□□ -1.16
COL28A1-202ENST00000430711 SMARCA1P28370 1054 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 HNRNPH1P31943 449 aaKnown RBP7.83□□□□□ -1.16
COL28A1-202ENST00000430711 HSPA9P38646 679 aaKnown RBP7.83□□□□□ -1.16
COL28A1-202ENST00000430711 ECE1P42892 770 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 GALCP54803 685 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 PSMD2Q13200 908 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 RPS6KA1Q15418 735 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 SLC15A2Q16348 729 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 LCE2DQ5TA82 110 aaPredicted RBP7.83□□□□□ -1.16
COL28A1-202ENST00000430711 ZNF746Q6NUN9 644 aaPredicted RBP7.83□□□□□ -1.16
COL28A1-202ENST00000430711 MAEAQ7L5Y9 396 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 TRMT1LQ7Z2T5 733 aaKnown RBP7.83□□□□□ -1.16
COL28A1-202ENST00000430711 NT5DC3Q86UY8 548 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 IFT20Q8IY31 132 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 RDH13Q8NBN7 331 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 KRT35Q92764 455 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 ATP6V1G3Q96LB4 118 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 PHF12Q96QT6 1004 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 TMBIM4Q9HC24 238 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 SLC12A6Q9UHW9 1150 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 POLRMTO00411 1230 aaKnown RBP7.83□□□□□ -1.16
COL28A1-202ENST00000430711 EVI5O60447 810 aa7.83□□□□□ -1.16
COL28A1-202ENST00000430711 AFPP02771 609 aaKnown RBP7.83□□□□□ -1.16
COL28A1-202ENST00000430711 ATP2B4P23634 1241 aa7.83□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms