RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 ATP6V1G3Q96LB4 118 aa22.47■■□□□ 1.19
CLK3-202ENST00000395066 ABCB4P21439 1286 aa22.47■■□□□ 1.19
CLK3-202ENST00000395066 HSD17B3P37058 310 aa22.47■■□□□ 1.19
CLK3-202ENST00000395066 FNTAP49354 379 aa22.47■■□□□ 1.19
CLK3-202ENST00000395066 JAM2P57087 298 aa22.47■■□□□ 1.19
CLK3-202ENST00000395066 UAP1Q16222 522 aaPredicted RBP22.47■■□□□ 1.19
CLK3-202ENST00000395066 GLYCTKQ8IVS8 523 aa22.47■■□□□ 1.19
CLK3-202ENST00000395066 TPH2Q8IWU9 490 aa22.47■■□□□ 1.19
CLK3-202ENST00000395066 LNX1Q8TBB1 728 aaPredicted RBP22.47■■□□□ 1.19
CLK3-202ENST00000395066 PAGR1Q9BTK6 254 aa22.47■■□□□ 1.19
CLK3-202ENST00000395066 ZMYM2Q9UBW7 1377 aa22.47■■□□□ 1.19
CLK3-202ENST00000395066 THSD7AQ9UPZ6 1657 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 H0YHG0 523 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 KRIT1O00522 736 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 FLOT1O75955 427 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 FSBPO95073 299 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 COPB2P35606 906 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 SREBF1P36956 1147 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 PTGISQ16647 500 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 RINT1Q6NUQ1 792 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 MYCT1Q8N699 235 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 ZNF473Q8WTR7 871 aaKnown RBP22.46■■□□□ 1.19
CLK3-202ENST00000395066 MKL1Q969V6 931 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 GLT8D2Q9H1C3 349 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 NYAP2Q9P242 653 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 NR2E1Q9Y466 385 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 TOM1O60784 492 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 H2AFZP0C0S5 128 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 H2AFVQ71UI9 128 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 C1orf131Q8NDD1 294 aaKnown RBP22.46■■□□□ 1.19
CLK3-202ENST00000395066 ISCUQ9H1K1 167 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 LRRC4CQ9HCJ2 640 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 IGSF9BQ9UPX0 1349 aa22.46■■□□□ 1.19
CLK3-202ENST00000395066 PGRMC1O00264 195 aaKnown RBP22.45■■□□□ 1.19
CLK3-202ENST00000395066 DAPK3O43293 454 aa22.45■■□□□ 1.19
CLK3-202ENST00000395066 EVI5O60447 810 aa22.45■■□□□ 1.19
CLK3-202ENST00000395066 TRIM49P0CI25 452 aa22.45■■□□□ 1.19
CLK3-202ENST00000395066 TRIM49CP0CI26 452 aa22.45■■□□□ 1.19
CLK3-202ENST00000395066 GALCP54803 685 aa22.45■■□□□ 1.19
CLK3-202ENST00000395066 RRP1BQ14684 758 aaKnown RBP22.45■■□□□ 1.19
CLK3-202ENST00000395066 CCDC91Q7Z6B0 441 aa22.45■■□□□ 1.19
CLK3-202ENST00000395066 TRIM31Q9BZY9 425 aa22.45■■□□□ 1.19
CLK3-202ENST00000395066 LRRC37AA6NMS7 1700 aa22.45■■□□□ 1.18
CLK3-202ENST00000395066 KLRG2A4D1S0 409 aaPredicted RBP22.45■■□□□ 1.18
CLK3-202ENST00000395066 BTNL10A8MVZ5 291 aa22.45■■□□□ 1.18
CLK3-202ENST00000395066 HMGB1P1B2RPK0 211 aaPredicted RBP22.45■■□□□ 1.18
CLK3-202ENST00000395066 MDH1P40925 334 aaKnown RBP22.45■■□□□ 1.18
CLK3-202ENST00000395066 PRKCIP41743 596 aa22.45■■□□□ 1.18
CLK3-202ENST00000395066 SYDE2Q5VT97 1194 aa22.45■■□□□ 1.18
CLK3-202ENST00000395066 YTHDF3Q7Z739 585 aaKnown RBP22.45■■□□□ 1.18
CLK3-202ENST00000395066 BZW2Q9Y6E2 419 aaKnown RBP22.45■■□□□ 1.18
CLK3-202ENST00000395066 MYO1FO00160 1098 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 TTI1O43156 1089 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 HSPA9P38646 679 aaKnown RBP22.44■■□□□ 1.18
CLK3-202ENST00000395066 CYP2J2P51589 502 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 MOXD1Q6UVY6 613 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 OLIG1Q8TAK6 271 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 ACTRT1Q8TDG2 376 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 DYDC2Q96IM9 177 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 MYCBPQ99417 103 aaPredicted RBP22.44■■□□□ 1.18
CLK3-202ENST00000395066 BUD13Q9BRD0 619 aaKnown RBP eCLIP22.44■■□□□ 1.182e-8■■■□□ 17.6
CLK3-202ENST00000395066 WDR18Q9BV38 432 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 DPH5Q9H2P9 285 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 PI4KBQ9UBF8 816 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 NENFQ9UMX5 172 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 A0A1W2PRG0 241 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 GH2P01242 217 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 PLS1Q14651 629 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 FAM186BQ8IYM0 893 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 RDH13Q8NBN7 331 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 PBKQ96KB5 322 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 CABS1Q96KC9 395 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 GJD4Q96KN9 370 aaPredicted RBP22.44■■□□□ 1.18
CLK3-202ENST00000395066 CCT8L2Q96SF2 557 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 BCCIPQ9P287 314 aaKnown RBP eCLIP22.44■■□□□ 1.18
CLK3-202ENST00000395066 QSER1Q2KHR3 1735 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 TULP1O00294 542 aaPredicted RBP22.44■■□□□ 1.18
CLK3-202ENST00000395066 ITGB3BPQ13352 177 aaPredicted RBP22.44■■□□□ 1.18
CLK3-202ENST00000395066 ABCB5Q2M3G0 1257 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 CBWD6Q4V339 395 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 CBWD3Q5JTY5 395 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 CBWD5Q5RIA9 395 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 C10orf76Q5T2E6 689 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 NT5DC3Q86UY8 548 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 NLRP14Q86W24 1093 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 PALB2Q86YC2 1186 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 SEPT12Q8IYM1 358 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 MYCBPAPQ8TBZ2 947 aa22.44■■□□□ 1.18
CLK3-202ENST00000395066 C10orf71Q711Q0 1435 aa22.43■■□□□ 1.18
CLK3-202ENST00000395066 FAM13AO94988 1023 aa22.43■■□□□ 1.18
CLK3-202ENST00000395066 EYA4O95677 639 aa22.43■■□□□ 1.18
CLK3-202ENST00000395066 CFBP00751 764 aa22.43■■□□□ 1.18
CLK3-202ENST00000395066 RPL13P26373 211 aaKnown RBP22.43■■□□□ 1.18
CLK3-202ENST00000395066 UBLCP1Q8WVY7 318 aaPredicted RBP22.43■■□□□ 1.18
CLK3-202ENST00000395066 FAM20AQ96MK3 541 aa22.43■■□□□ 1.18
CLK3-202ENST00000395066 ZDHHC15Q96MV8 337 aa22.43■■□□□ 1.18
CLK3-202ENST00000395066 SEPT11Q9NVA2 429 aaKnown RBP22.43■■□□□ 1.18
CLK3-202ENST00000395066 TAS2R14Q9NYV8 317 aa22.43■■□□□ 1.18
CLK3-202ENST00000395066 TBX3O15119 743 aa22.43■■□□□ 1.18
CLK3-202ENST00000395066 BUB1BO60566 1050 aaPredicted RBP22.43■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms