RNA–Protein interactions for RNA: ENST00000389629.8

RTF1-201, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTF1, Length 5,021 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-201ENST00000389629 PPP1R9AQ9ULJ8 1098 aa15.36■□□□□ 0.05
RTF1-201ENST00000389629 NPHP3-ACAD11A0A0J9YXS1 232 aa15.36■□□□□ 0.05
RTF1-201ENST00000389629 NSMFQ6X4W1 530 aa15.36■□□□□ 0.05
RTF1-201ENST00000389629 PPP4R3CPQ6ZMV5 832 aa15.36■□□□□ 0.05
RTF1-201ENST00000389629 LRRC34Q8IZ02 419 aa15.36■□□□□ 0.05
RTF1-201ENST00000389629 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.36■□□□□ 0.05
RTF1-201ENST00000389629 STAMBPL1Q96FJ0 436 aa15.36■□□□□ 0.05
RTF1-201ENST00000389629 SLITRK6Q9H5Y7 841 aa15.36■□□□□ 0.05
RTF1-201ENST00000389629 TXNDC16Q9P2K2 825 aa15.36■□□□□ 0.05
RTF1-201ENST00000389629 PDE1CQ14123 709 aaPredicted RBP15.36■□□□□ 0.05
RTF1-201ENST00000389629 GLYCTKQ8IVS8 523 aa15.36■□□□□ 0.05
RTF1-201ENST00000389629 CCDC89Q8N998 374 aa15.36■□□□□ 0.05
RTF1-201ENST00000389629 FNBP1Q96RU3 617 aa15.36■□□□□ 0.05
RTF1-201ENST00000389629 ISCUQ9H1K1 167 aa15.36■□□□□ 0.05
RTF1-201ENST00000389629 PCIF1Q9H4Z3 704 aa15.36■□□□□ 0.05
RTF1-201ENST00000389629 CCNL1Q9UK58 526 aaPredicted RBP15.36■□□□□ 0.05
RTF1-201ENST00000389629 DNAJC12Q9UKB3 198 aa15.36■□□□□ 0.05
RTF1-201ENST00000389629 FAM205AQ6ZU69 1335 aa15.36■□□□□ 0.05
RTF1-201ENST00000389629 MEGF6O75095 1541 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 PPP1R12AO14974 1030 aaPredicted RBP15.35■□□□□ 0.05
RTF1-201ENST00000389629 NAB2Q15742 525 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 GSDMBQ8TAX9 411 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 ADAM33Q9BZ11 813 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 UBE2TQ9NPD8 197 aaPredicted RBP15.35■□□□□ 0.05
RTF1-201ENST00000389629 TTLL1O95922 423 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 PLCB4Q15147 1175 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 SPATA21Q7Z572 469 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 TBC1D22AQ8WUA7 517 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 KBTBD4Q9NVX7 518 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 USP17L15C9J2P7 530 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 USP17L13C9JLJ4 530 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 USP17L11C9JVI0 530 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 USP17L18D6R9N7 530 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 USP17L22D6RA61 530 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 USP17L17D6RBQ6 530 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 USP17L19D6RCP7 530 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 USP17L20D6RJB6 530 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 USP17L24Q0WX57 530 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 HP1BP3Q5SSJ5 553 aaPredicted RBP15.35■□□□□ 0.05
RTF1-201ENST00000389629 SLFN13Q68D06 897 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 USP17L6PQ6QN14 398 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 ADGRA1Q86SQ6 560 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 FBXO11Q86XK2 927 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 USP15Q9Y4E8 981 aaPredicted RBP15.35■□□□□ 0.05
RTF1-201ENST00000389629 POTEFA5A3E0 1075 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 hCG_1984214I3L0E3 225 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 SMIM22K7EJ46 135 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 STXBP3O00186 592 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 POTEIP0CG38 1075 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 ESRRAP11474 423 aaPredicted RBP15.35■□□□□ 0.05
RTF1-201ENST00000389629 POTEGQ6S5H5 508 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 POTEEQ6S8J3 1075 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 ZNF713Q8N859 430 aaPredicted RBP15.35■□□□□ 0.05
RTF1-201ENST00000389629 RBM17Q96I25 401 aaKnown RBP15.35■□□□□ 0.05
RTF1-201ENST00000389629 ANAPC4Q9UJX5 808 aa15.35■□□□□ 0.05
RTF1-201ENST00000389629 THRAP3Q9Y2W1 955 aaKnown RBP15.35■□□□□ 0.05
RTF1-201ENST00000389629 C3P01024 1663 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 hCG_2014768A0A024R1R8 64 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 RCCD1A6NED2 376 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 PODXLO00592 558 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 TOM1O60784 492 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 SETSIPP0DME0 302 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 PSMC4P43686 418 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 UBXN2AP68543 259 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 AMPD2Q01433 879 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 GPATCH4Q5T3I0 446 aaKnown RBP15.34■□□□□ 0.05
RTF1-201ENST00000389629 CREG2Q8IUH2 290 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 ANKS1AQ92625 1134 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 HOOK2Q96ED9 719 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 MTMR8Q96EF0 704 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 FAM53CQ9NYF3 392 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 STOML1Q9UBI4 398 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 A0A087X0T9 212 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 NR3C1P04150 777 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 FAM228BP0C875 321 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 HSPA6P17066 643 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 STAT3P40763 770 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 SWT1Q5T5J6 900 aaKnown RBP15.34■□□□□ 0.05
RTF1-201ENST00000389629 PNMA6FA0A0J9YX94 578 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 PRLRP16471 622 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 LONRF1Q17RB8 773 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 KCTD19Q17RG1 926 aaPredicted RBP15.34■□□□□ 0.05
RTF1-201ENST00000389629 AGBL2Q5U5Z8 902 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 C12orf60Q5U649 245 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 SEMA6BQ9H3T3 888 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 TMBIM4Q9HC24 238 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP15.34■□□□□ 0.05
RTF1-201ENST00000389629 GYG2O15488 501 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 FSBPO95073 299 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 SEPT6Q14141 434 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.34■□□□□ 0.05
RTF1-201ENST00000389629 TSNARE1Q96NA8 513 aa15.34■□□□□ 0.05
RTF1-201ENST00000389629 CDCA7Q9BWT1 371 aaPredicted RBP15.34■□□□□ 0.05
RTF1-201ENST00000389629 MAK16Q9BXY0 300 aaKnown RBP15.34■□□□□ 0.05
RTF1-201ENST00000389629 PEAK1Q9H792 1746 aa15.33■□□□□ 0.05
RTF1-201ENST00000389629 KIF3CO14782 793 aa15.33■□□□□ 0.05
RTF1-201ENST00000389629 WDR59Q6PJI9 974 aa15.33■□□□□ 0.05
RTF1-201ENST00000389629 FUKQ8N0W3 1084 aa15.33■□□□□ 0.05
RTF1-201ENST00000389629 SREK1Q8WXA9 508 aaKnown RBP15.33■□□□□ 0.05
RTF1-201ENST00000389629 REXO2Q9Y3B8 237 aaKnown RBP15.33■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms