RNA–Protein interactions for RNA: ENSMUST00000113440.1

Ccdc88b-201, Transcript of Coiled-coil domain-containing protein 88B, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ccdc88b, Length 4,959 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ccdc88b-201ENSMUST00000113440 Fthl17aQ9DAX0 182 aa16.73■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Klra10Q9R1G6 266 aa16.73■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Men1O88559 611 aaKnown RBP16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Slurp2P0DP59 97 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Rapgef5Q8C0Q9 814 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Adgra1Q8C4G9 578 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Phf20l1Q8CCJ9 1013 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Polr2bQ8CFI7 1174 aaKnown RBP16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Slc5a5Q99PN0 618 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Josd2Q9CR30 188 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Klra17Q9JMA4 273 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Ror2Q9Z138 944 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Arfgef2A2A5R2 1792 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Nova2D3YVV7 556 aaKnown RBP16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Lrriq3Q14DL3 633 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Bpifb6Q8BU51 449 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Kiaa0391Q8JZY4 584 aaKnown RBP16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Ppp1r16bQ8VHQ3 568 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Atf2P16951 487 aaKnown RBP16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Actn4P57780 912 aaKnown RBP16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Gm10392Q3V3I3 114 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 E2f8Q58FA4 860 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 DaglaQ6WQJ1 1044 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Scfd2Q8BTY8 684 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Drap1Q9D6N5 205 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Rexo5D3YW29 759 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Stk10O55098 966 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Ap1g2O88512 791 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Tbc1d30Q69ZT9 766 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 PodnQ7TQ62 611 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 P2ry10Q8BFU7 328 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Ccdc15Q8C9M2 810 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 AticQ9CWJ9 592 aaKnown RBP16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Robo1O89026 1612 aa16.72■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Etnk2A7MCT6 385 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Olfr552E9Q545 317 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Ppef2O35385 757 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 MyocO70624 490 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Dab2P98078 766 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Sulf1Q8K007 870 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Snx1Q9WV80 522 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Taf4E9QAP7 1042 aaKnown RBP16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Clcn6O35454 870 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Art2bO35975 289 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Ca8P28651 291 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Bbs7Q8K2G4 715 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Pla2g12bQ99P27 195 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Serpina9Q9D7D2 418 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Pacsin2Q9WVE8 486 aaKnown RBP16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Dlg1Q811D0 905 aaKnown RBP16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Txndc5Q91W90 417 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Lgr5Q9Z1P4 907 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Ccdc175E9PVB3 822 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Gm3127E9Q9P5 263 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Gm3453K7N724 263 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 CopeO89079 308 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Gga3Q8BMI3 718 aa16.71■□□□□ 0.27
Ccdc88b-201ENSMUST00000113440 Miga1Q4QQM5 600 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Cfap52Q5F201 620 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Cnksr2Q80YA9 1032 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 TbckQ8BM85 762 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Zhx2Q8C0C0 836 aaKnown RBP16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Nfat5Q9WV30 1534 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Vwa3aQ3UVV9 1148 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 ItgaeQ60677 1167 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Clca4aQ6Q473 924 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 H6pdQ8CFX1 789 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 CalcbQ99MP3 130 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Spata17Q9D552 379 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Rnf6Q9DBU5 667 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Eya4Q9Z191 616 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 RictorQ6QI06 1708 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Sesn2P58043 480 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Cct8l1Q80YT3 562 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Ireb2Q811J3 963 aaKnown RBP16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 KynuQ9CXF0 464 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 MymkQ9D1N4 221 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 MlklQ9D2Y4 472 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Riok3Q9DBU3 519 aaKnown RBP16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Cyp2c69E9PXC3 491 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Ifnar1P33896 590 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Cyp2c40P56657 491 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Recql4Q75NR7 1216 aaKnown RBP16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Arhgef19Q8BWA8 802 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Mrgprx1Q8CIP3 322 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Snx24Q9CRB0 169 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Rbm31yQ9D3U4 565 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Dnajb7Q9QYI8 312 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Fxr2Q9WVR4 673 aaKnown RBP16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Speer3W4VSP1 261 aa16.7■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Mroh7A2AVR2 1279 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Trappc11B2RXC1 1133 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Nr1i3O35627 358 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Frmd8Q3UFK8 466 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Dzip3Q7TPV2 1204 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 RimklbQ80WS1 387 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Gpt2Q8BGT5 522 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Snx14Q8BHY8 964 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Vps37bQ8R0J7 285 aa16.69■□□□□ 0.26
Ccdc88b-201ENSMUST00000113440 Olfr805Q8VFI4 319 aa16.69■□□□□ 0.26
Retrieved 100 of 22,080 RNA–protein pairs in 39.7 ms