RNA–Protein interactions for RNA: ENST00000602011.5

SHKBP1-227, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 897 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-227ENST00000602011 CENPQQ7L2Z9 268 aaPredicted RBP20.25■□□□□ 0.83
SHKBP1-227ENST00000602011 PLA2G4DQ86XP0 818 aa20.25■□□□□ 0.83
SHKBP1-227ENST00000602011 SMAP1Q8IYB5 467 aaPredicted RBP20.25■□□□□ 0.83
SHKBP1-227ENST00000602011 SPPL3Q8TCT6 385 aa20.25■□□□□ 0.83
SHKBP1-227ENST00000602011 ZNF302Q9NR11 478 aa20.25■□□□□ 0.83
SHKBP1-227ENST00000602011 CEP131Q9UPN4 1083 aa20.25■□□□□ 0.83
SHKBP1-227ENST00000602011 PCDHB12Q9Y5F1 795 aa20.25■□□□□ 0.83
SHKBP1-227ENST00000602011 KLF18A0A0U1RQI7 1052 aa20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 IPO5O00410 1097 aaKnown RBP20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 RPS6KA5O75582 802 aa20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 NFX1Q12986 1120 aaKnown RBP20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 SMAD4Q13485 552 aaKnown RBP20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 PDE12Q6L8Q7 609 aaKnown RBP20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 ZNF746Q6NUN9 644 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 PDXDC2PQ6P474 469 aa20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 SLC24A5Q71RS6 500 aa20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 KIAA0319LQ8IZA0 1049 aa20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 FBXL16Q8N461 479 aa20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 BICD2Q8TD16 824 aa20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 LINC01599Q8WXQ3 324 aa20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 BBXQ8WY36 941 aaPredicted RBP20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 FBXL18Q96ME1 805 aa20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 ZMYND12Q9H0C1 365 aa20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 ALG13Q9NP73 1137 aaKnown RBP20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 RGS18Q9NS28 235 aa20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 MRPL42Q9Y6G3 142 aaKnown RBP20.24■□□□□ 0.83
SHKBP1-227ENST00000602011 MAGEB2O15479 319 aa20.23■□□□□ 0.83
SHKBP1-227ENST00000602011 DHX15O43143 795 aaKnown RBP20.23■□□□□ 0.83
SHKBP1-227ENST00000602011 TBX10O75333 385 aa20.23■□□□□ 0.83
SHKBP1-227ENST00000602011 TRIOO75962 3097 aa20.23■□□□□ 0.83
SHKBP1-227ENST00000602011 CRYBB1P53674 252 aaPredicted RBP20.23■□□□□ 0.83
SHKBP1-227ENST00000602011 TMEM62Q0P6H9 643 aa20.23■□□□□ 0.83
SHKBP1-227ENST00000602011 HFE2Q6ZVN8 426 aa20.23■□□□□ 0.83
SHKBP1-227ENST00000602011 CRYGNQ8WXF5 182 aa20.23■□□□□ 0.83
SHKBP1-227ENST00000602011 ELAC1Q9H777 363 aaKnown RBP20.23■□□□□ 0.83
SHKBP1-227ENST00000602011 FAM217BQ9NTX9 383 aaPredicted RBP20.23■□□□□ 0.83
SHKBP1-227ENST00000602011 MUTYHQ9UIF7 546 aa20.23■□□□□ 0.83
SHKBP1-227ENST00000602011 CD207Q9UJ71 328 aa20.23■□□□□ 0.83
SHKBP1-227ENST00000602011 MAFBQ9Y5Q3 323 aaPredicted RBP20.23■□□□□ 0.83
SHKBP1-227ENST00000602011 DENND3A2RUS2 1198 aa20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 MBTPS2O43462 519 aa20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 CDC45O75419 566 aa20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 EYA4O95677 639 aa20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 CCNE2O96020 404 aa20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 ITGB1P05556 798 aa20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 MRE11P49959 708 aa20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 METAP2P50579 478 aaKnown RBP eCLIP20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 AKAP17AQ02040 695 aaKnown RBP20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 NHLH1Q02575 133 aa20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 CAMK1Q14012 370 aa20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 SWSAP1Q6NVH7 229 aa20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 EFHBQ8N7U6 833 aa20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 KLHL23Q8NBE8 558 aa20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 TRAPPC12Q8WVT3 735 aa20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 PGBD1Q96JS3 809 aa20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 ZNF577Q9BSK1 485 aa20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 TMX1Q9H3N1 280 aa20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 ERVK-5Q9HDB9 667 aa20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 PCDHA10Q9Y5I2 948 aa20.22■□□□□ 0.83
SHKBP1-227ENST00000602011 IGLV3-22A0A075B6J6 115 aa20.21■□□□□ 0.83
SHKBP1-227ENST00000602011 FAM86B1E9PN63 330 aa20.21■□□□□ 0.83
SHKBP1-227ENST00000602011 PRPF3O43395 683 aaKnown RBP20.21■□□□□ 0.83
SHKBP1-227ENST00000602011 PSAPP07602 524 aa20.21■□□□□ 0.83
SHKBP1-227ENST00000602011 FAM86B2P0C5J1 330 aa20.21■□□□□ 0.83
SHKBP1-227ENST00000602011 TMOD1P28289 359 aa20.21■□□□□ 0.83
SHKBP1-227ENST00000602011 CIITAP33076 1130 aa20.21■□□□□ 0.83
SHKBP1-227ENST00000602011 ADD1P35611 737 aaKnown RBP20.21■□□□□ 0.83
SHKBP1-227ENST00000602011 FAM189BP81408 668 aa20.21■□□□□ 0.83
SHKBP1-227ENST00000602011 JAKMIP3Q5VZ66 844 aa20.21■□□□□ 0.83
SHKBP1-227ENST00000602011 CKAP2LQ8IYA6 745 aa20.21■□□□□ 0.83
SHKBP1-227ENST00000602011 RASEFQ8IZ41 740 aa20.21■□□□□ 0.83
SHKBP1-227ENST00000602011 REXO1Q8N1G1 1221 aaKnown RBP20.21■□□□□ 0.83
SHKBP1-227ENST00000602011 POF1BQ8WVV4 589 aa20.21■□□□□ 0.83
SHKBP1-227ENST00000602011 FAM167AQ96KS9 214 aa20.21■□□□□ 0.83
SHKBP1-227ENST00000602011 CDCA3Q99618 268 aaPredicted RBP20.21■□□□□ 0.83
SHKBP1-227ENST00000602011 TMEM260Q9NX78 707 aa20.21■□□□□ 0.83
SHKBP1-227ENST00000602011 HOXA2O43364 376 aa20.2■□□□□ 0.82
SHKBP1-227ENST00000602011 DNAJB1P25685 340 aa20.2■□□□□ 0.82
SHKBP1-227ENST00000602011 CDC27P30260 824 aa20.2■□□□□ 0.82
SHKBP1-227ENST00000602011 NDUFV1P49821 464 aa20.2■□□□□ 0.82
SHKBP1-227ENST00000602011 ADCK5Q3MIX3 580 aa20.2■□□□□ 0.82
SHKBP1-227ENST00000602011 CCDC60Q8IWA6 550 aaPredicted RBP20.2■□□□□ 0.82
SHKBP1-227ENST00000602011 KCNB2Q92953 911 aa20.2■□□□□ 0.82
SHKBP1-227ENST00000602011 ADAM2Q99965 735 aa20.2■□□□□ 0.82
SHKBP1-227ENST00000602011 NRBP2Q9NSY0 501 aa20.2■□□□□ 0.82
SHKBP1-227ENST00000602011 TMEM161AQ9NX61 479 aa20.2■□□□□ 0.82
SHKBP1-227ENST00000602011 ST3GAL5Q9UNP4 418 aa20.2■□□□□ 0.82
SHKBP1-227ENST00000602011 GINS2Q9Y248 185 aa20.2■□□□□ 0.82
SHKBP1-227ENST00000602011 NOC2LQ9Y3T9 749 aaKnown RBP20.2■□□□□ 0.82
SHKBP1-227ENST00000602011 C9IYK1 514 aa20.19■□□□□ 0.82
SHKBP1-227ENST00000602011 IBSPP21815 317 aaPredicted RBP20.19■□□□□ 0.82
SHKBP1-227ENST00000602011 GATMP50440 423 aa20.19■□□□□ 0.82
SHKBP1-227ENST00000602011 CDC42EP1Q00587 391 aa20.19■□□□□ 0.82
SHKBP1-227ENST00000602011 COASYQ13057 564 aa20.19■□□□□ 0.82
SHKBP1-227ENST00000602011 PAN2Q504Q3 1202 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-227ENST00000602011 ADGRD2Q7Z7M1 963 aa20.19■□□□□ 0.82
SHKBP1-227ENST00000602011 CCDC148Q8NFR7 591 aa20.19■□□□□ 0.82
SHKBP1-227ENST00000602011 MSLNLQ96KJ4 702 aa20.19■□□□□ 0.82
SHKBP1-227ENST00000602011 TCEANC2Q96MN5 208 aa20.19■□□□□ 0.82
SHKBP1-227ENST00000602011 ATP6V0A4Q9HBG4 840 aa20.19■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms