RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 KCNMB3Q9NPA1 279 aa26.93■■□□□ 1.9
SHMT1-206ENST00000579558 CDH23Q9H251 3354 aa26.92■■□□□ 1.9
SHMT1-206ENST00000579558 CHD9Q3L8U1 2897 aa26.92■■□□□ 1.9
SHMT1-206ENST00000579558 C22orf31O95567 290 aa26.92■■□□□ 1.9
SHMT1-206ENST00000579558 TSHZ1Q6ZSZ6 1077 aa26.92■■□□□ 1.9
SHMT1-206ENST00000579558 MAFAQ8NHW3 353 aaPredicted RBP26.92■■□□□ 1.9
SHMT1-206ENST00000579558 NRBP2Q9NSY0 501 aa26.92■■□□□ 1.9
SHMT1-206ENST00000579558 EVPLQ92817 2033 aa26.92■■□□□ 1.9
SHMT1-206ENST00000579558 MYO9BQ13459 2157 aa26.91■■□□□ 1.9
SHMT1-206ENST00000579558 ST18O60284 1047 aa26.91■■□□□ 1.9
SHMT1-206ENST00000579558 MARCH6O60337 910 aa26.91■■□□□ 1.9
SHMT1-206ENST00000579558 HMGN5P82970 282 aaKnown RBP26.91■■□□□ 1.9
SHMT1-206ENST00000579558 GUCY1B3Q02153 619 aa26.91■■□□□ 1.9
SHMT1-206ENST00000579558 POTEDQ86YR6 584 aa26.91■■□□□ 1.9
SHMT1-206ENST00000579558 C8orf76Q96K31 380 aa26.91■■□□□ 1.9
SHMT1-206ENST00000579558 RAD9AQ99638 391 aa26.91■■□□□ 1.9
SHMT1-206ENST00000579558 CELF4Q9BZC1 486 aaKnown RBP26.91■■□□□ 1.9
SHMT1-206ENST00000579558 TBX3O15119 743 aa26.9■■□□□ 1.9
SHMT1-206ENST00000579558 ARHGEF15O94989 841 aa26.9■■□□□ 1.9
SHMT1-206ENST00000579558 TAP1Q03518 808 aa26.9■■□□□ 1.9
SHMT1-206ENST00000579558 SAFBQ15424 915 aaKnown RBP eCLIP26.9■■□□□ 1.9
SHMT1-206ENST00000579558 KIAA0319LQ8IZA0 1049 aa26.9■■□□□ 1.9
SHMT1-206ENST00000579558 METTL13Q8N6R0 699 aa26.9■■□□□ 1.9
SHMT1-206ENST00000579558 VAV3Q9UKW4 847 aa26.9■■□□□ 1.9
SHMT1-206ENST00000579558 SQORQ9Y6N5 450 aa26.9■■□□□ 1.9
SHMT1-206ENST00000579558 LOXHD1Q8IVV2 1947 aa26.89■■□□□ 1.9
SHMT1-206ENST00000579558 LOC101059915A0A1B0GWI6 518 aaPredicted RBP26.89■■□□□ 1.9
SHMT1-206ENST00000579558 LCHNA4D1U4 455 aa26.89■■□□□ 1.9
SHMT1-206ENST00000579558 MAGEB2O15479 319 aa26.89■■□□□ 1.9
SHMT1-206ENST00000579558 PPP2R5CQ13362 524 aa26.89■■□□□ 1.9
SHMT1-206ENST00000579558 USP38Q8NB14 1042 aa26.89■■□□□ 1.9
SHMT1-206ENST00000579558 FAM184AQ8NB25 1140 aa26.89■■□□□ 1.9
SHMT1-206ENST00000579558 HAS1Q92839 578 aa26.89■■□□□ 1.9
SHMT1-206ENST00000579558 AGO3Q9H9G7 860 aaKnown RBP26.89■■□□□ 1.9
SHMT1-206ENST00000579558 CERS4Q9HA82 394 aa26.89■■□□□ 1.9
SHMT1-206ENST00000579558 KDM3AQ9Y4C1 1321 aa26.89■■□□□ 1.89
SHMT1-206ENST00000579558 BAG4O95429 457 aaKnown RBP26.88■■□□□ 1.89
SHMT1-206ENST00000579558 CD52P31358 61 aa26.88■■□□□ 1.89
SHMT1-206ENST00000579558 GINS2Q9Y248 185 aa26.88■■□□□ 1.89
SHMT1-206ENST00000579558 EML1O00423 815 aa26.87■■□□□ 1.89
SHMT1-206ENST00000579558 SLFN12Q8IYM2 578 aa26.87■■□□□ 1.89
SHMT1-206ENST00000579558 BANK1Q8NDB2 785 aa26.87■■□□□ 1.89
SHMT1-206ENST00000579558 IL27Q8NEV9 243 aa26.87■■□□□ 1.89
SHMT1-206ENST00000579558 TOP1MTQ969P6 601 aa26.87■■□□□ 1.89
SHMT1-206ENST00000579558 TBC1D32Q96NH3 1257 aa26.87■■□□□ 1.89
SHMT1-206ENST00000579558 SEPT9Q9UHD8 586 aaPredicted RBP26.87■■□□□ 1.89
SHMT1-206ENST00000579558 INSL6Q9Y581 213 aa26.87■■□□□ 1.89
SHMT1-206ENST00000579558 UPP2O95045 317 aa26.86■■□□□ 1.89
SHMT1-206ENST00000579558 IGFBP4P22692 258 aa26.86■■□□□ 1.89
SHMT1-206ENST00000579558 CLCN3P51790 818 aa26.86■■□□□ 1.89
SHMT1-206ENST00000579558 PAK2Q13177 524 aa26.86■■□□□ 1.89
SHMT1-206ENST00000579558 ADGRE1Q14246 886 aa26.86■■□□□ 1.89
SHMT1-206ENST00000579558 XKR3Q5GH77 459 aa26.86■■□□□ 1.89
SHMT1-206ENST00000579558 EFCAB12Q6NXP0 572 aa26.86■■□□□ 1.89
SHMT1-206ENST00000579558 PPP1R16BQ96T49 567 aa26.86■■□□□ 1.89
SHMT1-206ENST00000579558 UNC80Q8N2C7 3258 aa26.85■■□□□ 1.89
SHMT1-206ENST00000579558 VTNP04004 478 aa26.85■■□□□ 1.89
SHMT1-206ENST00000579558 TMOD1P28289 359 aa26.85■■□□□ 1.89
SHMT1-206ENST00000579558 PSMC5P62195 406 aa26.85■■□□□ 1.89
SHMT1-206ENST00000579558 MTERF2Q49AM1 385 aa26.85■■□□□ 1.89
SHMT1-206ENST00000579558 LRRC71Q8N4P6 559 aa26.85■■□□□ 1.89
SHMT1-206ENST00000579558 ARNTL2Q8WYA1 636 aa26.85■■□□□ 1.89
SHMT1-206ENST00000579558 MAP7D2Q96T17 732 aa26.85■■□□□ 1.89
SHMT1-206ENST00000579558 CHD7Q9P2D1 2997 aa26.85■■□□□ 1.89
SHMT1-206ENST00000579558 PADI3Q9ULW8 664 aa26.85■■□□□ 1.89
SHMT1-206ENST00000579558 WNT7AO00755 349 aa26.84■■□□□ 1.89
SHMT1-206ENST00000579558 HTRA4P83105 476 aaPredicted RBP26.84■■□□□ 1.89
SHMT1-206ENST00000579558 TBC1D8BQ0IIM8 1120 aa26.84■■□□□ 1.89
SHMT1-206ENST00000579558 TARBP2Q15633 366 aaKnown RBP26.84■■□□□ 1.89
SHMT1-206ENST00000579558 CALCRLQ16602 461 aa26.84■■□□□ 1.89
SHMT1-206ENST00000579558 KIZQ2M2Z5 673 aa26.84■■□□□ 1.89
SHMT1-206ENST00000579558 NCAPH2Q6IBW4 605 aa26.84■■□□□ 1.89
SHMT1-206ENST00000579558 SPRED2Q7Z698 418 aa26.84■■□□□ 1.89
SHMT1-206ENST00000579558 FBXO18Q8NFZ0 1043 aa26.84■■□□□ 1.89
SHMT1-206ENST00000579558 YME1L1Q96TA2 773 aa26.84■■□□□ 1.89
SHMT1-206ENST00000579558 FTHL17Q9BXU8 183 aa26.84■■□□□ 1.89
SHMT1-206ENST00000579558 NIFKQ9BYG3 293 aaKnown RBP26.84■■□□□ 1.89
SHMT1-206ENST00000579558 CDHR5Q9HBB8 845 aa26.84■■□□□ 1.89
SHMT1-206ENST00000579558 AKT3Q9Y243 479 aa26.84■■□□□ 1.89
SHMT1-206ENST00000579558 LINC01553A4QN01 128 aa26.83■■□□□ 1.89
SHMT1-206ENST00000579558 TMEM150BA6NC51 233 aa26.83■■□□□ 1.89
SHMT1-206ENST00000579558 DDX11L8A8MPP1 907 aa26.83■■□□□ 1.89
SHMT1-206ENST00000579558 RFXAPO00287 272 aa26.83■■□□□ 1.89
SHMT1-206ENST00000579558 ENPP3O14638 875 aa26.83■■□□□ 1.89
SHMT1-206ENST00000579558 NEMFO60524 1076 aa26.83■■□□□ 1.89
SHMT1-206ENST00000579558 STBD1O95210 358 aa26.83■■□□□ 1.89
SHMT1-206ENST00000579558 QARSP47897 775 aaKnown RBP26.83■■□□□ 1.89
SHMT1-206ENST00000579558 TMEM266Q2M3C6 531 aa26.83■■□□□ 1.89
SHMT1-206ENST00000579558 LINC01465Q8N7H1 131 aa26.83■■□□□ 1.89
SHMT1-206ENST00000579558 SUGCTQ9HAC7 445 aa26.83■■□□□ 1.89
SHMT1-206ENST00000579558 EPOPA6NHQ4 379 aa26.82■■□□□ 1.88
SHMT1-206ENST00000579558 DKC1O60832 514 aaKnown RBP eCLIP26.82■■□□□ 1.88
SHMT1-206ENST00000579558 P4HBP07237 508 aaKnown RBP26.82■■□□□ 1.88
SHMT1-206ENST00000579558 ATP2B1P20020 1258 aa26.82■■□□□ 1.88
SHMT1-206ENST00000579558 CRYBB1P53674 252 aaPredicted RBP26.82■■□□□ 1.88
SHMT1-206ENST00000579558 NFX1Q12986 1120 aaKnown RBP26.82■■□□□ 1.88
SHMT1-206ENST00000579558 GNL2Q13823 731 aaKnown RBP26.82■■□□□ 1.88
SHMT1-206ENST00000579558 EPHA7Q15375 998 aa26.82■■□□□ 1.88
SHMT1-206ENST00000579558 TMEM40Q8WWA1 233 aa26.82■■□□□ 1.88
SHMT1-206ENST00000579558 LINC01599Q8WXQ3 324 aa26.82■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms