RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 ADGRD2Q7Z7M1 963 aa21.6■■□□□ 1.05
VPS35-202ENST00000561713 PLA2G4DQ86XP0 818 aa21.6■■□□□ 1.05
VPS35-202ENST00000561713 SPPL3Q8TCT6 385 aa21.6■■□□□ 1.05
VPS35-202ENST00000561713 P2RX5Q93086 422 aa21.6■■□□□ 1.05
VPS35-202ENST00000561713 MSLNLQ96KJ4 702 aa21.6■■□□□ 1.05
VPS35-202ENST00000561713 IGLV3-22A0A075B6J6 115 aa21.59■■□□□ 1.05
VPS35-202ENST00000561713 NDUFV1P49821 464 aa21.59■■□□□ 1.05
VPS35-202ENST00000561713 CCT2P78371 535 aaKnown RBP21.59■■□□□ 1.05
VPS35-202ENST00000561713 PAN2Q504Q3 1202 aaKnown RBP21.59■■□□□ 1.05
VPS35-202ENST00000561713 CCDC60Q8IWA6 550 aaPredicted RBP21.59■■□□□ 1.05
VPS35-202ENST00000561713 CMTR2Q8IYT2 770 aaKnown RBP21.59■■□□□ 1.05
VPS35-202ENST00000561713 REXO1Q8N1G1 1221 aaKnown RBP21.59■■□□□ 1.05
VPS35-202ENST00000561713 KLHL23Q8NBE8 558 aa21.59■■□□□ 1.05
VPS35-202ENST00000561713 MFSD14AQ96MC6 490 aa21.59■■□□□ 1.05
VPS35-202ENST00000561713 CLEC1BQ9P126 229 aa21.59■■□□□ 1.05
VPS35-202ENST00000561713 ZNF318Q5VUA4 2279 aa21.58■■□□□ 1.05
VPS35-202ENST00000561713 CCDC196A0A1B0GTZ2 297 aa21.58■■□□□ 1.05
VPS35-202ENST00000561713 RRN3P2A6NIE6 340 aa21.58■■□□□ 1.05
VPS35-202ENST00000561713 BACH1O14867 736 aa21.58■■□□□ 1.05
VPS35-202ENST00000561713 STAT5BP51692 787 aa21.58■■□□□ 1.05
VPS35-202ENST00000561713 IER5Q5VY09 327 aa21.58■■□□□ 1.05
VPS35-202ENST00000561713 NPAS4Q8IUM7 802 aa21.58■■□□□ 1.05
VPS35-202ENST00000561713 CRYGNQ8WXF5 182 aa21.58■■□□□ 1.05
VPS35-202ENST00000561713 SLC26A6Q9BXS9 759 aa21.58■■□□□ 1.05
VPS35-202ENST00000561713 VPS54Q9P1Q0 977 aa21.58■■□□□ 1.05
VPS35-202ENST00000561713 PADI3Q9ULW8 664 aa21.58■■□□□ 1.05
VPS35-202ENST00000561713 ESYT2A0FGR8 921 aa21.57■■□□□ 1.04
VPS35-202ENST00000561713 REC8O95072 547 aa21.57■■□□□ 1.04
VPS35-202ENST00000561713 EYA4O95677 639 aa21.57■■□□□ 1.04
VPS35-202ENST00000561713 IBSPP21815 317 aaPredicted RBP21.57■■□□□ 1.04
VPS35-202ENST00000561713 GATMP50440 423 aa21.57■■□□□ 1.04
VPS35-202ENST00000561713 NTRK3Q16288 839 aa21.57■■□□□ 1.04
VPS35-202ENST00000561713 NAALADL2Q58DX5 795 aa21.57■■□□□ 1.04
VPS35-202ENST00000561713 EDAQ92838 391 aa21.57■■□□□ 1.04
VPS35-202ENST00000561713 PPP1R16BQ96T49 567 aa21.57■■□□□ 1.04
VPS35-202ENST00000561713 LARP6Q9BRS8 491 aaKnown RBP21.57■■□□□ 1.04
VPS35-202ENST00000561713 FTHL17Q9BXU8 183 aa21.57■■□□□ 1.04
VPS35-202ENST00000561713 ZMYND12Q9H0C1 365 aa21.57■■□□□ 1.04
VPS35-202ENST00000561713 GLT8D2Q9H1C3 349 aa21.57■■□□□ 1.04
VPS35-202ENST00000561713 PCDHGC5Q9Y5F6 944 aa21.57■■□□□ 1.04
VPS35-202ENST00000561713 TRPV2Q9Y5S1 764 aa21.57■■□□□ 1.04
VPS35-202ENST00000561713 SQORQ9Y6N5 450 aa21.57■■□□□ 1.04
VPS35-202ENST00000561713 FNDC1Q4ZHG4 1894 aaPredicted RBP21.56■■□□□ 1.04
VPS35-202ENST00000561713 PRPF3O43395 683 aaKnown RBP21.56■■□□□ 1.04
VPS35-202ENST00000561713 NRIP1P48552 1158 aa21.56■■□□□ 1.04
VPS35-202ENST00000561713 NIPA1Q7RTP0 329 aa21.56■■□□□ 1.04
VPS35-202ENST00000561713 TRMT1LQ7Z2T5 733 aaKnown RBP21.56■■□□□ 1.04
VPS35-202ENST00000561713 RBM23Q86U06 439 aaKnown RBP21.56■■□□□ 1.04
VPS35-202ENST00000561713 EFHBQ8N7U6 833 aa21.56■■□□□ 1.04
VPS35-202ENST00000561713 POF1BQ8WVV4 589 aa21.56■■□□□ 1.04
VPS35-202ENST00000561713 PPP2R3CQ969Q6 453 aa21.56■■□□□ 1.04
VPS35-202ENST00000561713 AGXT2Q9BYV1 514 aa21.56■■□□□ 1.04
VPS35-202ENST00000561713 C6orf50Q9HD87 102 aa21.56■■□□□ 1.04
VPS35-202ENST00000561713 PLXNA4Q9HCM2 1894 aa21.56■■□□□ 1.04
VPS35-202ENST00000561713 TECTAO75443 2155 aa21.55■■□□□ 1.04
VPS35-202ENST00000561713 IGSF9BQ9UPX0 1349 aa21.55■■□□□ 1.04
VPS35-202ENST00000561713 M0QZ92 97 aa21.55■■□□□ 1.04
VPS35-202ENST00000561713 IPO5O00410 1097 aaKnown RBP21.55■■□□□ 1.04
VPS35-202ENST00000561713 DHX15O43143 795 aaKnown RBP21.55■■□□□ 1.04
VPS35-202ENST00000561713 ATG7O95352 703 aa21.55■■□□□ 1.04
VPS35-202ENST00000561713 RPLP2P05387 115 aaKnown RBP21.55■■□□□ 1.04
VPS35-202ENST00000561713 AKAP17AQ02040 695 aaKnown RBP21.55■■□□□ 1.04
VPS35-202ENST00000561713 PAK2Q13177 524 aa21.55■■□□□ 1.04
VPS35-202ENST00000561713 TOB2Q14106 344 aaPredicted RBP21.55■■□□□ 1.04
VPS35-202ENST00000561713 TMEM266Q2M3C6 531 aa21.55■■□□□ 1.04
VPS35-202ENST00000561713 MTHFD1LQ6UB35 978 aa21.55■■□□□ 1.04
VPS35-202ENST00000561713 ABHD15Q6UXT9 468 aa21.55■■□□□ 1.04
VPS35-202ENST00000561713 PLPPR4Q7Z2D5 763 aa21.55■■□□□ 1.04
VPS35-202ENST00000561713 TEX2Q8IWB9 1127 aa21.55■■□□□ 1.04
VPS35-202ENST00000561713 SMRP1Q8NCR6 262 aa21.55■■□□□ 1.04
VPS35-202ENST00000561713 ZNF577Q9BSK1 485 aa21.55■■□□□ 1.04
VPS35-202ENST00000561713 CELF4Q9BZC1 486 aaKnown RBP21.55■■□□□ 1.04
VPS35-202ENST00000561713 TMX1Q9H3N1 280 aa21.55■■□□□ 1.04
VPS35-202ENST00000561713 GINS2Q9Y248 185 aa21.55■■□□□ 1.04
VPS35-202ENST00000561713 PCDHA2Q9Y5H9 948 aa21.55■■□□□ 1.04
VPS35-202ENST00000561713 IGKV6D-21A0A0A0MT36 114 aa21.54■■□□□ 1.04
VPS35-202ENST00000561713 GLP2RO95838 553 aa21.54■■□□□ 1.04
VPS35-202ENST00000561713 STAG3L1P0CL83 205 aa21.54■■□□□ 1.04
VPS35-202ENST00000561713 PSMA5P28066 241 aa21.54■■□□□ 1.04
VPS35-202ENST00000561713 PDIA3P30101 505 aaKnown RBP21.54■■□□□ 1.04
VPS35-202ENST00000561713 COASYQ13057 564 aa21.54■■□□□ 1.04
VPS35-202ENST00000561713 PRR16Q569H4 304 aa21.54■■□□□ 1.04
VPS35-202ENST00000561713 FAM160B1Q5W0V3 765 aa21.54■■□□□ 1.04
VPS35-202ENST00000561713 PDXDC2PQ6P474 469 aa21.54■■□□□ 1.04
VPS35-202ENST00000561713 ATP8B4Q8TF62 1192 aa21.54■■□□□ 1.04
VPS35-202ENST00000561713 CCDC12Q8WUD4 166 aaPredicted RBP21.54■■□□□ 1.04
VPS35-202ENST00000561713 ZNF302Q9NR11 478 aa21.54■■□□□ 1.04
VPS35-202ENST00000561713 BARX2Q9UMQ3 279 aaPredicted RBP21.54■■□□□ 1.04
VPS35-202ENST00000561713 CYP3A4P08684 503 aa21.53■■□□□ 1.04
VPS35-202ENST00000561713 SWSAP1Q6NVH7 229 aa21.53■■□□□ 1.04
VPS35-202ENST00000561713 PHOX2BQ99453 314 aa21.53■■□□□ 1.04
VPS35-202ENST00000561713 RNF26Q9BY78 433 aaPredicted RBP21.53■■□□□ 1.04
VPS35-202ENST00000561713 LRFN2Q9ULH4 789 aa21.53■■□□□ 1.04
VPS35-202ENST00000561713 TMEM221A6NGB7 291 aa21.52■■□□□ 1.04
VPS35-202ENST00000561713 ZBTB42B2RXF5 422 aa21.52■■□□□ 1.04
VPS35-202ENST00000561713 LOC730098B7Z3J9 87 aa21.52■■□□□ 1.04
VPS35-202ENST00000561713 M0R296 226 aa21.52■■□□□ 1.04
VPS35-202ENST00000561713 DTNBO60941 627 aa21.52■■□□□ 1.04
VPS35-202ENST00000561713 IFNAR1P17181 557 aa21.52■■□□□ 1.04
VPS35-202ENST00000561713 ATP4AP20648 1035 aa21.52■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms