RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 ZNF484Q5JVG2 852 aa18.73■□□□□ 0.59
CLN3-208ENST00000561505 TMEM40Q8WWA1 233 aa18.73■□□□□ 0.59
CLN3-208ENST00000561505 FBXL18Q96ME1 805 aa18.73■□□□□ 0.59
CLN3-208ENST00000561505 YTHDC1Q96MU7 727 aaKnown RBP18.73■□□□□ 0.59
CLN3-208ENST00000561505 IGFLR1Q9H665 355 aa18.73■□□□□ 0.59
CLN3-208ENST00000561505 C1orf112Q9NSG2 853 aa18.73■□□□□ 0.59
CLN3-208ENST00000561505 RNF216Q9NWF9 866 aaPredicted RBP18.73■□□□□ 0.59
CLN3-208ENST00000561505 NOC2LQ9Y3T9 749 aaKnown RBP18.73■□□□□ 0.59
CLN3-208ENST00000561505 TECTAO75443 2155 aa18.73■□□□□ 0.59
CLN3-208ENST00000561505 LOXHD1Q8IVV2 1947 aa18.72■□□□□ 0.59
CLN3-208ENST00000561505 FAM86B1E9PN63 330 aa18.72■□□□□ 0.59
CLN3-208ENST00000561505 FAM86B2P0C5J1 330 aa18.72■□□□□ 0.59
CLN3-208ENST00000561505 GATMP50440 423 aa18.72■□□□□ 0.59
CLN3-208ENST00000561505 ADCY7P51828 1080 aa18.72■□□□□ 0.59
CLN3-208ENST00000561505 NHLH1Q02575 133 aa18.72■□□□□ 0.59
CLN3-208ENST00000561505 KCNC3Q14003 757 aa18.72■□□□□ 0.59
CLN3-208ENST00000561505 DSC3Q14574 896 aa18.72■□□□□ 0.59
CLN3-208ENST00000561505 CLUL1Q15846 466 aa18.72■□□□□ 0.59
CLN3-208ENST00000561505 TMEM184AQ6ZMB5 413 aa18.72■□□□□ 0.59
CLN3-208ENST00000561505 SLC24A5Q71RS6 500 aa18.72■□□□□ 0.59
CLN3-208ENST00000561505 CCDC60Q8IWA6 550 aaPredicted RBP18.72■□□□□ 0.59
CLN3-208ENST00000561505 NEK1Q96PY6 1258 aa18.72■□□□□ 0.59
CLN3-208ENST00000561505 ELAC1Q9H777 363 aaKnown RBP18.72■□□□□ 0.59
CLN3-208ENST00000561505 MUTYHQ9UIF7 546 aa18.72■□□□□ 0.59
CLN3-208ENST00000561505 MAFBQ9Y5Q3 323 aaPredicted RBP18.72■□□□□ 0.59
CLN3-208ENST00000561505 V9GY48 417 aaPredicted RBP18.72■□□□□ 0.59
CLN3-208ENST00000561505 ESYT2A0FGR8 921 aa18.71■□□□□ 0.59
CLN3-208ENST00000561505 SMCO2A6NFE2 343 aa18.71■□□□□ 0.59
CLN3-208ENST00000561505 ODR4Q5SWX8 454 aa18.71■□□□□ 0.59
CLN3-208ENST00000561505 PDE12Q6L8Q7 609 aaKnown RBP18.71■□□□□ 0.59
CLN3-208ENST00000561505 SYNE3Q6ZMZ3 975 aa18.71■□□□□ 0.59
CLN3-208ENST00000561505 DHX32Q7L7V1 743 aaKnown RBP18.71■□□□□ 0.59
CLN3-208ENST00000561505 ALYREFQ86V81 257 aaKnown RBP18.71■□□□□ 0.59
CLN3-208ENST00000561505 SUSD6Q92537 303 aa18.71■□□□□ 0.59
CLN3-208ENST00000561505 PGBD1Q96JS3 809 aa18.71■□□□□ 0.59
CLN3-208ENST00000561505 MFSD14AQ96MC6 490 aa18.71■□□□□ 0.59
CLN3-208ENST00000561505 FNDC1Q4ZHG4 1894 aaPredicted RBP18.71■□□□□ 0.59
CLN3-208ENST00000561505 FSD2A1L4K1 749 aa18.7■□□□□ 0.58
CLN3-208ENST00000561505 FSCN2O14926 492 aa18.7■□□□□ 0.58
CLN3-208ENST00000561505 RPS6KA5O75582 802 aa18.7■□□□□ 0.58
CLN3-208ENST00000561505 C22orf31O95567 290 aa18.7■□□□□ 0.58
CLN3-208ENST00000561505 ATF7P17544 494 aaPredicted RBP18.7■□□□□ 0.58
CLN3-208ENST00000561505 NRIP1P48552 1158 aa18.7■□□□□ 0.58
CLN3-208ENST00000561505 NDUFV1P49821 464 aa18.7■□□□□ 0.58
CLN3-208ENST00000561505 CRYBB1P53674 252 aaPredicted RBP18.7■□□□□ 0.58
CLN3-208ENST00000561505 RTN1Q16799 776 aa18.7■□□□□ 0.58
CLN3-208ENST00000561505 TMEM266Q2M3C6 531 aa18.7■□□□□ 0.58
CLN3-208ENST00000561505 PAN2Q504Q3 1202 aaKnown RBP18.7■□□□□ 0.58
CLN3-208ENST00000561505 FAM160B1Q5W0V3 765 aa18.7■□□□□ 0.58
CLN3-208ENST00000561505 LINC01465Q8N7H1 131 aa18.7■□□□□ 0.58
CLN3-208ENST00000561505 RASGRP4Q8TDF6 673 aa18.7■□□□□ 0.58
CLN3-208ENST00000561505 UIMC1Q96RL1 719 aa18.7■□□□□ 0.58
CLN3-208ENST00000561505 CDCA3Q99618 268 aaPredicted RBP18.7■□□□□ 0.58
CLN3-208ENST00000561505 ADAM2Q99965 735 aa18.7■□□□□ 0.58
CLN3-208ENST00000561505 CWH43Q9H720 699 aa18.7■□□□□ 0.58
CLN3-208ENST00000561505 TMEM260Q9NX78 707 aa18.7■□□□□ 0.58
CLN3-208ENST00000561505 ST3GAL5Q9UNP4 418 aa18.7■□□□□ 0.58
CLN3-208ENST00000561505 LZTS1Q9Y250 596 aa18.7■□□□□ 0.58
CLN3-208ENST00000561505 PCDHB7Q9Y5E2 793 aa18.7■□□□□ 0.58
CLN3-208ENST00000561505 PLXNA4Q9HCM2 1894 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 GPR182O15218 404 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 ZBTB43O43298 467 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 GPR32O75388 356 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 CDC27P30260 824 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 BMP2KLQ5H9B9 411 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 RNF20Q5VTR2 975 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 MCTP2Q6DN12 878 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 PLA2G4DQ86XP0 818 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 RASEFQ8IZ41 740 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 BBXQ8WY36 941 aaPredicted RBP18.69■□□□□ 0.58
CLN3-208ENST00000561505 ZMYND12Q9H0C1 365 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 ANO2Q9NQ90 1003 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 ZNF302Q9NR11 478 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 AAASQ9NRG9 546 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 TBC1D22BQ9NU19 505 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 TMEM161AQ9NX61 479 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 LRFN2Q9ULH4 789 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 PCDHB12Q9Y5F1 795 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 WDFY4Q6ZS81 3184 aa18.69■□□□□ 0.58
CLN3-208ENST00000561505 IPO5O00410 1097 aaKnown RBP18.68■□□□□ 0.58
CLN3-208ENST00000561505 CIITAP33076 1130 aa18.68■□□□□ 0.58
CLN3-208ENST00000561505 MRE11P49959 708 aa18.68■□□□□ 0.58
CLN3-208ENST00000561505 ERVFC1P60507 584 aa18.68■□□□□ 0.58
CLN3-208ENST00000561505 PLCB3Q01970 1234 aa18.68■□□□□ 0.58
CLN3-208ENST00000561505 NFX1Q12986 1120 aaKnown RBP18.68■□□□□ 0.58
CLN3-208ENST00000561505 DUSP6Q16828 381 aa18.68■□□□□ 0.58
CLN3-208ENST00000561505 PFKFB3Q16875 520 aaPredicted RBP18.68■□□□□ 0.58
CLN3-208ENST00000561505 ADCK5Q3MIX3 580 aa18.68■□□□□ 0.58
CLN3-208ENST00000561505 FAM102BQ5T8I3 360 aa18.68■□□□□ 0.58
CLN3-208ENST00000561505 ZNF746Q6NUN9 644 aaPredicted RBP18.68■□□□□ 0.58
CLN3-208ENST00000561505 SWSAP1Q6NVH7 229 aa18.68■□□□□ 0.58
CLN3-208ENST00000561505 PDXDC2PQ6P474 469 aa18.68■□□□□ 0.58
CLN3-208ENST00000561505 TRIM67Q6ZTA4 783 aa18.68■□□□□ 0.58
CLN3-208ENST00000561505 FAM228AQ86W67 206 aa18.68■□□□□ 0.58
CLN3-208ENST00000561505 ZNF710Q8N1W2 664 aa18.68■□□□□ 0.58
CLN3-208ENST00000561505 VN1R2Q8NFZ6 395 aa18.68■□□□□ 0.58
CLN3-208ENST00000561505 PHF7Q9BWX1 381 aaPredicted RBP18.68■□□□□ 0.58
CLN3-208ENST00000561505 USP15Q9Y4E8 981 aaPredicted RBP18.68■□□□□ 0.58
CLN3-208ENST00000561505 PCDHGC5Q9Y5F6 944 aa18.68■□□□□ 0.58
CLN3-208ENST00000561505 FGF18O76093 207 aa18.67■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms